View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_high_3 (Length: 494)
Name: NF20105_high_3
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 8393398 - 8392953
Alignment:
| Q |
16 |
attcctgtatataatggtagtatcattgatacattcccaatcagatacatcatttctttcaatttccttatcatttaaaggacgaattcgaaccgaaact |
115 |
Q |
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| T |
8393398 |
attcctgtatataatggtagtatcattgatacattcccaatcagatacatcatttcttgcaatttccttatcatttaaaggacgaattcgaaccgaaact |
8393299 |
T |
|
| Q |
116 |
tgaattctttcttcatgattttttgtagcctcttccattgcctcttcacctccaacagaacccannnnnnn--ctcactcaattcctcttcaatgatgag |
213 |
Q |
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| T |
8393298 |
tgaattctttcttcatgattttttgtagcctcttccattgcctcttcacctccaacagaacccatttttttttctcactcaattcctcttcaatgatgag |
8393199 |
T |
|
| Q |
214 |
aatgaatattatcacatgtcattgaattcatagcataccaaagaaaaatcactttgccttttaagctaatttaatgatgctttttgaattgtttgatgaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8393198 |
aatgaatattatcacatgtcattgaattcatagcataccaaagaaaaatcactttgccttttaagctaatttaatgatgctttttgaattgtttgatgaa |
8393099 |
T |
|
| Q |
314 |
ggttgttttgagttgttgggatggtatgaaacacaaggaccactcaaggcttcaacccccaatcattatctgcagagacaaattaatcaaaggttaaata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8393098 |
ggttgttttgagttgttgggatggtatgaaacacaaggaccactcaaggcttcaacccccaatcattatctgcagagacaaattaatcaaaggttaaata |
8392999 |
T |
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| Q |
414 |
aactcttgattcagaagaatactagataaatattttgtagacatgt |
459 |
Q |
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| T |
8392998 |
aactcttgattcagaagaatactagataaatattttgtagacatgt |
8392953 |
T |
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