View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_high_4 (Length: 395)
Name: NF20105_high_4
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_high_4 |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 12622246 - 12621867
Alignment:
| Q |
16 |
gaaactagattctttgtaagaacttgaatttgatttttccttgtaaccagctgacattctgatttagacagattttcatgtgccgcgtttagctgatctt |
115 |
Q |
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| T |
12622246 |
gaaactagattctttgtaagaacttgaatttgatttttccttgtaaccagctgacattctgatttagacagattttcatgtgccgcgttaagctgatctt |
12622147 |
T |
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| Q |
116 |
gcaattgacaagtcttggatgacctactatcaagttccttttctaatgttgcaattttacattttgatatattgagttgttcattaactacctgaagctc |
215 |
Q |
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| T |
12622146 |
gcaattgacgagtcttggatgacctactatcaagttccttttctaatgttgcaattttacattttgatattttgagttgttcattaactacctgaagctc |
12622047 |
T |
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| Q |
216 |
cttcatccatattgcgatatcttctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgaccc |
315 |
Q |
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| T |
12622046 |
cttcatccatattgcgatatcttctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgaccc |
12621947 |
T |
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| Q |
316 |
ttgctattctcagcttgaactttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctc |
395 |
Q |
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| T |
12621946 |
ttgctattctcagcttgaactttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctc |
12621867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 395
Target Start/End: Complemental strand, 12627892 - 12627745
Alignment:
| Q |
248 |
gctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaactttat |
347 |
Q |
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| T |
12627892 |
gctcttttagtttacgcacctcttcctctttcagcttcagttcttcgcgcacattatcaagctcaccctcactattctcaatttcaaccttcaactttat |
12627793 |
T |
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| Q |
348 |
aatctcttgttccgaaagctgaagtttaaaattagaaactcttagctc |
395 |
Q |
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| T |
12627792 |
agtttcttgttttgaaagttgaagtttaaaattggaaattcttagctc |
12627745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 12628149 - 12628103
Alignment:
| Q |
66 |
ctgacattctgatttagacagattttcatgtgccgcgtttagctgat |
112 |
Q |
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| T |
12628149 |
ctgacattctgatttagccagattttcatgtgcctctttaagctgat |
12628103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 244 - 395
Target Start/End: Complemental strand, 42819324 - 42819173
Alignment:
| Q |
244 |
gaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaact |
343 |
Q |
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|||| ||| ||||||| ||||| ||| |||| ||||||||||||||||||| ||| ||||||| |||||||||||| |||||| ||||||| ||||| | |
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| T |
42819324 |
gaaacctccttttgtttatgcatctcgtcctctttcagcttcaattcttcacacacattatcaaactgacccttgctgttctcaacttgaaccttcaagt |
42819225 |
T |
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| Q |
344 |
ttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctc |
395 |
Q |
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| T |
42819224 |
tgataacctctttttccgaaagttgaagctttaaattggtaactcttagctc |
42819173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 395
Target Start/End: Complemental strand, 42843251 - 42843094
Alignment:
| Q |
238 |
tctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactt |
337 |
Q |
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|||| ||||||| ||||||||| ||||| ||| | || |||||||||||||| |||| | | ||||| | |||||| ||| ||||| ||||||| | |
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| T |
42843251 |
tcttccgaaagcactttttgtttatgcaactccttctctttcagcttcaattcctcacataaatcatcaaacagaccctcactactctcaacttgaacct |
42843152 |
T |
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| Q |
338 |
tcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctc |
395 |
Q |
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||||||||||| |||||| ||||||||||||||| || ||||| | ||| |||||||| |
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| T |
42843151 |
tcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctc |
42843094 |
T |
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