View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_high_5 (Length: 355)
Name: NF20105_high_5
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 42883050 - 42883372
Alignment:
| Q |
16 |
atgatatgtatttctagtcctaaacatatcttattaaggcctgagggtgatatcttgcactgctttcttcttgcttcaattcttttggagccttcccaaa |
115 |
Q |
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| T |
42883050 |
atgatatgtatttctagtcctaaacatatcttattaaggcctaagggtgatatcttgcattgctttcttcttgcttcaattcttttggagccttcccaaa |
42883149 |
T |
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| Q |
116 |
ttcatcagctggcctatcagttgttttacatcagattgtttgacaggcttcgataagaacatctgagccccttcttccatacacctgttttttcagcaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42883150 |
ttcatcagctggcctatcagttgttttacatcagattgtttgacaggcttcgataagaacatctgagccccttcttccatacacctgttttttcagcaca |
42883249 |
T |
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| Q |
216 |
acaatgattgagtaggttaaacaaaagacaaatatacaagatacaaaaataaatggcattgttagtgcttgagacaaataattacttgttgatccttgtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42883250 |
acaatgattgagtaggttaaacaaaagacaaatatacaagatacaaaaataaatggcattgctagtgcttgagacaaataattacttgttgatccttgtt |
42883349 |
T |
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| Q |
316 |
ggtatattgtcagatgacatgat |
338 |
Q |
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||||||||||||||||||||||| |
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| T |
42883350 |
ggtatattgtcagatgacatgat |
42883372 |
T |
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