View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_1 (Length: 688)
Name: NF20105_low_1
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 3809729 - 3809460
Alignment:
| Q |
9 |
ttttcagagcaagagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctagctgaacacgtttccttccacagcg |
108 |
Q |
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| T |
3809729 |
ttttcagagcaagagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacatttccttccacatcg |
3809630 |
T |
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| Q |
109 |
tgttttcttatgataagcattaccagtctccattacttgtttccatatacgaaaaatgatacttctatgaacatcgtatagtaaagctactcgtgatatt |
208 |
Q |
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| T |
3809629 |
ttttttcttatgataagcattaccagtctccattacttgtttccatatacgataaatgatacttctatgaacatcgtatagtaaagctgctcgggatatt |
3809530 |
T |
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| Q |
209 |
acccctggactgtgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
278 |
Q |
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| T |
3809529 |
acccctggactgtgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
3809460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 281 - 540
Target Start/End: Complemental strand, 3809412 - 3809152
Alignment:
| Q |
281 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattaaagggaaaaaa-tatcgaaattcaattgatat |
379 |
Q |
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| T |
3809412 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattatagggaaaaaaatatcgaaattcaattgatat |
3809313 |
T |
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| Q |
380 |
--atcaactaaaaataacagggcacaaaaaagggaagaatatgtgtcattctactttaaacatgtacctgtagctatatggaattgttgaaagtcatttg |
477 |
Q |
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| T |
3809312 |
ttatcaactaaaaataacaag-cacaaaaaagggaagaatatgtgtcattctactttaaacatgtacatgtagctatatggaattgttgaaagtcatttg |
3809214 |
T |
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| Q |
478 |
cttcagggaatggcacatactgatcatcttcaactttatgcataatgtgtcattcaagcaaat |
540 |
Q |
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| T |
3809213 |
ctttagggaatggcacatactgatcatcttcaactttatgcat-atgtgtcattcaagcaaat |
3809152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 621 - 672
Target Start/End: Complemental strand, 3805141 - 3805090
Alignment:
| Q |
621 |
ttacacaccattttcatttgagcgagaatcggtgctgtttgtttcatcttca |
672 |
Q |
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| T |
3805141 |
ttacacaccattttcatttgagcaagaatcggtgctgtttgtttcatcttca |
3805090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 3809456 - 3809421
Alignment:
| Q |
217 |
actgtgtagttttccatgtccgtcgctcaagctcaa |
252 |
Q |
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| T |
3809456 |
actgtgtagttttccatgtccatcgctcaagctcaa |
3809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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