View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_11 (Length: 328)
Name: NF20105_low_11
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 27113084 - 27113389
Alignment:
| Q |
10 |
aagtgaatgattgtgagcctttgattaaacttaaattgaggaatatgatcatgaggcttcacatatggctgtatgttttagttttatatcaatgaaacta |
109 |
Q |
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| T |
27113084 |
aagtgaatgattgtgagcctttgattaaacttaaattgaggaatatgatcatgaggcttcacatatggctgtatgttttagttttatatcaatgaaacta |
27113183 |
T |
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| Q |
110 |
aaagtacatatcaagccacatttattttatcctctagaaagaagnnnnnnnn----gccaaatttatttgttcccattcttgaagttcagccattgggac |
205 |
Q |
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| T |
27113184 |
aaagtacatatcaagccacatttattttatcctctagaaagaagaagaaaaaaaaagccacatttatttgttcccattcttgaagttcagccattgggac |
27113283 |
T |
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| Q |
206 |
taaagagagaatgcatttgaaaagaaaaggtaaacttgtaaatgagataagaggaggtttcaatgtcaatgaatcgtctcaaacgcctgcaggaaaacca |
305 |
Q |
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| T |
27113284 |
taaagagagaatgcatttgaaaagaaaaggtaaacttgtaaatgagataagaggaggtttcaatgtcaatgaatcgtctcaaacgcctgcaggaaaacca |
27113383 |
T |
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| Q |
306 |
cccttt |
311 |
Q |
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|||||| |
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| T |
27113384 |
cccttt |
27113389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 39861754 - 39861799
Alignment:
| Q |
266 |
caatgtcaatgaatcgtctcaaacgcctgcaggaaaaccacccttt |
311 |
Q |
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| T |
39861754 |
caatgtcgatgaattttctcaaatgcctgcaggaaaaccacccttt |
39861799 |
T |
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