View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_12 (Length: 327)
Name: NF20105_low_12
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 5984873 - 5984585
Alignment:
| Q |
15 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
114 |
Q |
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||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5984873 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5984774 |
T |
|
| Q |
115 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataattaaagagcaca |
214 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5984773 |
aagagcatagagtaagggaagtacacacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaa----taaagagcaca |
5984678 |
T |
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| Q |
215 |
caaatacaaccccatcaagcaaccaagcaaaaactacaaaatgtattattattattattcatcatgttgttaacatttctgactaatggtgtatga |
310 |
Q |
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| T |
5984677 |
caaatacaaccccatcaagcaaccaagcaaaaactacaaaatg---tattattattattcatcatgttgttaacatttctgactaatggtgtatga |
5984585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 5968864 - 5968684
Alignment:
| Q |
15 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
114 |
Q |
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||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5968864 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5968765 |
T |
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| Q |
115 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
195 |
Q |
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| T |
5968764 |
aagagcatagagtaagggaagtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
5968684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 8715283 - 8715463
Alignment:
| Q |
15 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
114 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8715283 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
8715382 |
T |
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| Q |
115 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
195 |
Q |
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| T |
8715383 |
aagagcatagagtaagggatgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
8715463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 5963733 - 5963544
Alignment:
| Q |
13 |
caaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacac |
112 |
Q |
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|||| |||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| || || |
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| T |
5963733 |
caaaaggaattccaaaatcagtatcaaaattggcaagcacatcatcaagagttccttcaccaaatagaaggaacccaaagaagcttgtcagtacatatac |
5963634 |
T |
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| Q |
113 |
cgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
202 |
Q |
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|||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
5963633 |
tgaagagcatagagtaagggaagtacgcacaaccccacgcatccgtgaggaatcctccagttcattatcaatgttatgaactgcaaataa |
5963544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 5935336 - 5935147
Alignment:
| Q |
13 |
caaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacac |
112 |
Q |
| |
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|||| |||||||| |||| || ||||||||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
5935336 |
caaaaggaattccgagattagtatcaaaattggcaagaacgtcaggaagagtatcgtcaccaaatagaaggaacccaaagaagcttgtcagtaagtaaac |
5935237 |
T |
|
| Q |
113 |
cgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
202 |
Q |
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|||||||||||||||||||| | ||||||||| || ||||| |||||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
5935236 |
tgaagagcatagagtaagggaagcacgcacaacgccatgcatccatgaggagtcctccagttcattatctatgttgtgaactgcaaataa |
5935147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 5628147 - 5628331
Alignment:
| Q |
13 |
caaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacac |
112 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| ||| ||| ||||| |
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| T |
5628147 |
caaaaggaattccaagatcagcatcgaaattggcaagtacgtcatcaagagttccttcaccaaataggaggaacccaaagaagcttatcattaaatacac |
5628246 |
T |
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| Q |
113 |
cgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgca |
197 |
Q |
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|| ||||||||| |||| ||||| ||||| || |||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
5628247 |
ggatgagcatagaccgagggctgtacgtacaacgccttgcatctgtgagttgtcctcgagttcattatctatgctgtgaactgca |
5628331 |
T |
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