View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_13 (Length: 317)
Name: NF20105_low_13
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 5984396 - 5984102
Alignment:
| Q |
1 |
gcacctacacttctaattgaaggggtttcctgtgtccgatatgtgcatgtgataaaattattaccgacgtgtcagtgtcgtgtccagtgtctgcctcaat |
100 |
Q |
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||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984396 |
gcacctacacttctaattgaaggagttgccggtgtccgatatatgcatgtgataaaattattaccgacgtgtcagtgtcgtgtccagtgtctgcctcaat |
5984297 |
T |
|
| Q |
101 |
gcttcatagatcatgagtaataaaaacattaaaacagtgcaaccaggttctaaggaaaaggtttcaaagattttcttaccattaaagtgacagatgtatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5984296 |
gcttcatagatcatgagtaataaaaacattaaaacagcgcaaccaggttctaaggaaa-------aaagattttcttaccattaaagtgacagatgtatg |
5984204 |
T |
|
| Q |
201 |
cagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctgggaatctcaatgccctcgctaataat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5984203 |
cagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctgggaatctcaatgcccccgctaataat |
5984104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 5963166 - 5963036
Alignment:
| Q |
157 |
aaaggtttcaaagattttcttaccattaaagtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagta |
256 |
Q |
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|||||||||||| | |||| ||||||| |||||||||| || || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
5963166 |
aaaggtttcaaacaatttcataccattgtagtgacagatataagctgtcatcagcacaggaaatacagtgaatagatcaaaaacagaatctacatcagta |
5963067 |
T |
|
| Q |
257 |
atgatcgggaagagtctgggaatctcaatgc |
287 |
Q |
| |
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|||| |||||||||||||| ||| |||||| |
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| T |
5963066 |
atgacagggaagagtctgggcatcccaatgc |
5963036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 5968145 - 5968040
Alignment:
| Q |
197 |
tatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctgggaatctcaatgccctcgctaa |
296 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||| ||||| ||| || |||||||||||| |||||||||||| || ||| ||||||| |||||| |
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| T |
5968145 |
tatgctgtcatcagcacaggaactacagtgaatagatcgaaaactgaagctgcatcagtaatgaccgggaagagtcttggcatcccaatgccgccgctaa |
5968046 |
T |
|
| Q |
297 |
taatct |
302 |
Q |
| |
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|||||| |
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|
| T |
5968045 |
taatct |
5968040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 8715927 - 8716052
Alignment:
| Q |
177 |
taccattaaagtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctggg |
276 |
Q |
| |
|
||||||| ||||||| | |||||| ||||||||||| ||| |||| ||||||||||| ||||| ||| || |||||||||||| |||||||||||| || |
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| T |
8715927 |
taccattgtagtgacatacgtatgctgtcatcagcaccggaactacagtgaatagatcgaaaactgaagctgcatcagtaatgaccgggaagagtcttgg |
8716026 |
T |
|
| Q |
277 |
aatctcaatgccctcgctaataatct |
302 |
Q |
| |
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||| ||||||| |||||||||||| |
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|
| T |
8716027 |
catcccaatgccgccgctaataatct |
8716052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 5934545 - 5934429
Alignment:
| Q |
186 |
agtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctgggaatctcaat |
285 |
Q |
| |
|
||||||||||||| || |||| || ||||||| |||| |||||||| |||||||| ||| || |||||||||||| |||||||||||| || ||| |||| |
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| T |
5934545 |
agtgacagatgtaagcggtcaccaacacaggaactacggtgaataggtcaaaaactgaagctgcatcagtaatgaccgggaagagtcttggcatcccaat |
5934446 |
T |
|
| Q |
286 |
gccctcgctaataatct |
302 |
Q |
| |
|
||| | |||||||||| |
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|
| T |
5934445 |
gcctccactaataatct |
5934429 |
T |
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