View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_14 (Length: 311)
Name: NF20105_low_14
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 31019891 - 31020179
Alignment:
| Q |
11 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatattaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31019891 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
31019990 |
T |
|
| Q |
111 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattacttaagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31019991 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattacttaagaa |
31020090 |
T |
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| Q |
211 |
aattaaaacaaaaagcatgtgaacatacaaagataaca--taatttttcttcnnnnnnncttcgaagataacataattttgttcatcct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
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| T |
31020091 |
aattaaaacaaaaagcatgtgaacatacaaagataacatctaatttttcttcaaaaaaattgcgaagataacataattttgttcatcct |
31020179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 31029772 - 31030060
Alignment:
| Q |
11 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatattaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31029772 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
31029871 |
T |
|
| Q |
111 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattacttaagaa |
210 |
Q |
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| T |
31029872 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattacttaagaa |
31029971 |
T |
|
| Q |
211 |
aattaaaacaaaaagcatgtgaacatacaaagataaca--taatttttcttcnnnnnnncttcgaagataacataattttgttcatcct |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
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| T |
31029972 |
aattaaaacaaaaagcatgtgaacatacaaagataacatctaatttttcttcaaaaaaattgcgaagataacataattttgttcatcct |
31030060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 31489655 - 31489408
Alignment:
| Q |
11 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatattaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
31489655 |
acatcatcaatggagtccaaaagtaatagatttgctactttatctatatgagaattcataccaactagttcttttggaagagatgaataattgtgaccca |
31489556 |
T |
|
| Q |
111 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattacttaagaa |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| | || || ||||||||||||||| ||||||||| |||| |
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| T |
31489555 |
atatattcaatatctcgtcaacaatctttttaatctcttcatattgaggcctgaaagttaagaaaaagtcaaccaataacacttaatcattacataag-g |
31489457 |
T |
|
| Q |
211 |
aattaaaacaaaaagcatgtgaacatacaaagataacataatttttctt |
259 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||| |||||| |
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| T |
31489456 |
aattaaaacaaaaagaatgtgaacatgcaaagataacataatctttctt |
31489408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 31159340 - 31159560
Alignment:
| Q |
11 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatattaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
110 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |||||||||||||| | ||| || ||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
31159340 |
acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccg |
31159439 |
T |
|
| Q |
111 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattac-ttaaga |
209 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| || ||| | ||||||| ||||||||| ||||| |
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| T |
31159440 |
atatattcgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaa-aagtcaccaaataacaacaaatcattacattaag- |
31159537 |
T |
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| Q |
210 |
aaattaaaacaaaaagcatgtga |
232 |
Q |
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||||||||||||||||||||||| |
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| T |
31159538 |
aaattaaaacaaaaagcatgtga |
31159560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 31528598 - 31528662
Alignment:
| Q |
109 |
caatatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaa |
173 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| || | || ||||| |||||||||| |
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| T |
31528598 |
caatatatttactatctcttcaacaatctttttaatctctgctgactggggcctgaaagtttaaa |
31528662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 17438708 - 17438646
Alignment:
| Q |
108 |
ccaatatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagttt |
170 |
Q |
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|||||||||||| ||||| || |||||||||||||||||| ||| |||| ||||| ||||||| |
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| T |
17438708 |
ccaatatattcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagttt |
17438646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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