View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_16 (Length: 307)
Name: NF20105_low_16
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 1868232 - 1868391
Alignment:
| Q |
127 |
tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaagga |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1868232 |
tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttttcaaagga |
1868331 |
T |
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| Q |
227 |
tttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagccaa |
286 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
1868332 |
cttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaa |
1868391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 129 - 286
Target Start/End: Original strand, 1842625 - 1842782
Alignment:
| Q |
129 |
ctaaaatattcacacaagatcagctaaacaaggcaaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1842625 |
ctaaaatattcacacaagatcagctaaacaaggccaccaaagactttgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatt |
1842724 |
T |
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| Q |
229 |
tctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagccaa |
286 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
1842725 |
tctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaa |
1842782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1842532 - 1842580
Alignment:
| Q |
12 |
tcatcaaaatgaaagagaaattctttgagcagaatggtggtttgatttt |
60 |
Q |
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| T |
1842532 |
tcatcaaaatgaaagagaaattctttgagcagaatggtggtctgatttt |
1842580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 1856695 - 1856796
Alignment:
| Q |
185 |
ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc |
284 |
Q |
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|||||||| || ||||| ||||||||||| |||| |||||| || |||||||| ||||||||||||||||||||||| |||| |||||| | ||||| |
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| T |
1856695 |
ttaatcataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagcc |
1856794 |
T |
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| Q |
285 |
aa |
286 |
Q |
| |
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|| |
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| T |
1856795 |
aa |
1856796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1868117 - 1868165
Alignment:
| Q |
12 |
tcatcaaaatgaaagagaaattctttgagcagaatggtggtttgatttt |
60 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
1868117 |
tcatcaaaatgaaagagaaattcttcgaacagaatggtggtttgatttt |
1868165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 1816364 - 1816258
Alignment:
| Q |
170 |
aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa |
269 |
Q |
| |
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|||||||| |||| |||||||| || | ||| ||||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||| |||| |
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| T |
1816364 |
aactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaaggggaacttgatgataatagaattgtggctatcaaaaagtccaaaa |
1816265 |
T |
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| Q |
270 |
taataga |
276 |
Q |
| |
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|||||| |
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| T |
1816264 |
caataga |
1816258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 9156283 - 9156170
Alignment:
| Q |
164 |
accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt |
263 |
Q |
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|||||||||| || || || ||||||||||||| ||| ||||||||||| |||||||||||| || || || || | ||| |||||| | ||||| | |
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| T |
9156283 |
accaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgtaaaaaaat |
9156184 |
T |
|
| Q |
264 |
caaaaataatagat |
277 |
Q |
| |
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|||||||||||||| |
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| T |
9156183 |
caaaaataatagat |
9156170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 9219104 - 9218992
Alignment:
| Q |
164 |
accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt |
263 |
Q |
| |
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|||||||||| ||||| | |||||||| || | ||| ||||||||||| |||||||||||| || | ||||| | |||||| ||| ||||||||| |
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| T |
9219104 |
accaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgtcaaaaagt |
9219005 |
T |
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| Q |
264 |
caaaaataataga |
276 |
Q |
| |
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| ||||||||||| |
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| T |
9219004 |
ccaaaataataga |
9218992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 37567622 - 37567738
Alignment:
| Q |
170 |
aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa |
269 |
Q |
| |
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|||||||| ||||| |||| ||| || | ||| ||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||| || |||| |
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| T |
37567622 |
aactttgatgagaacttaaccataggtagaggaggttttggtacagttttcaaagggaaactagatgataatagaactgttgctatcaaaaaatccaaaa |
37567721 |
T |
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| Q |
270 |
taatagatagaagccaa |
286 |
Q |
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||||||| ||||||| |
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| T |
37567722 |
caatagatgaaagccaa |
37567738 |
T |
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