View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_18 (Length: 304)
Name: NF20105_low_18
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3220588 - 3220859
Alignment:
| Q |
18 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaatatccgccggcaaaagcctttgatccagtatagggatcccaccgagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
3220588 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaatatcagccggcaaaagcctttgatccagtataggtatcccgccgagg |
3220687 |
T |
|
| Q |
118 |
ttgagagtatttgcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgag |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220688 |
ttgagagtatttgcagttgtcatgattgctgattttatagcggctggtgaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgag |
3220787 |
T |
|
| Q |
218 |
gacaagacattgaagtaccggaaacaatgttaaaagctagaattttgttgtctacagaaacaccccatgcag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3220788 |
gacaagacattgaagtaccggaaacaatgttaaaagctggaattttgttgtctacagaaacaccccatgcag |
3220859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3230821 - 3231092
Alignment:
| Q |
18 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaatatccgccggcaaaagcctttgatccagtatagggatcccaccgagg |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
3230821 |
accaggatcattagctttaaaaggattaacatgtcctgcaccagtagcgaaaatatcagccggcaaaagcctttgatccagtataggtatcccgccgagg |
3230920 |
T |
|
| Q |
118 |
ttgagagtatttgcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3230921 |
ttgagagtatttgcagttgtcatgattgctgattttatagcggctggcgaccaatcagggtgagaacttttgatcaatgcagcaataccacttaggtgag |
3231020 |
T |
|
| Q |
218 |
gacaagacattgaagtaccggaaacaatgttaaaagctagaattttgttgtctacagaaacaccccatgcag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3231021 |
gacaagacattgaagtaccggaaacaatgttaaaagctggaattttgttgtctacagaaacaccccatgcag |
3231092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3225573 - 3225844
Alignment:
| Q |
18 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaatatccgccggcaaaagcctttgatccagtatagggatcccaccgagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
3225573 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcgaaaatatcagccggaaaaagcctttgatccagtatagggatcccgccgagg |
3225672 |
T |
|
| Q |
118 |
ttgagagtatttgcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
3225673 |
ttgagagtatttgcagttgtcatgattgccgattttatagcggctggtgaccaatcaggatgagaacttttgatcaatgcagcaataccacttaggtgag |
3225772 |
T |
|
| Q |
218 |
gacaagacattgaagtaccggaaacaatgttaaaagctagaattttgttgtctacagaaacaccccatgcag |
289 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
3225773 |
gacaagacatcgaagtacccgaaacaatgtcaaaagctggaattttgttgtctacagaaacagcccatgcag |
3225844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 3179220 - 3179005
Alignment:
| Q |
18 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaatatccgccggcaaaagcctttgatccagtatagggatcccaccgagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||| |||||||||| |||||| ||||| |||||| |
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|
| T |
3179220 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaacatcagcaggtgaaagtctttgatccaatataggaatcccgccgagg |
3179121 |
T |
|
| Q |
118 |
ttgagagtatttgcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgag |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||| || |||| |
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|
| T |
3179120 |
ttgagagtattagcagttgtcatgattgctgattttattgcagctggcgaccaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgag |
3179021 |
T |
|
| Q |
218 |
gacaagacattgaagt |
233 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3179020 |
gacaagacattgaagt |
3179005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 3239620 - 3239835
Alignment:
| Q |
18 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaatatccgccggcaaaagcctttgatccagtatagggatcccaccgagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||| |||||||||| |||||| ||||| |||||| |
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|
| T |
3239620 |
accaggatcattagctttaacaggattaacatgtcctgcaccagtagcaaaaacatcagcaggtgaaagtctttgatccaatataggaatcccgccgagg |
3239719 |
T |
|
| Q |
118 |
ttgagagtatttgcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgag |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||| || |||| |
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| T |
3239720 |
ttgagagtattagcagttgtcatgattgctgattttattgcagctggcgaccaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgag |
3239819 |
T |
|
| Q |
218 |
gacaagacattgaagt |
233 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3239820 |
gacaagacattgaagt |
3239835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 3207844 - 3207965
Alignment:
| Q |
130 |
gcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgaggacaagacattg |
229 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||| | ||| |||| ||| ||||| || |||||||| ||||||| |
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|
| T |
3207844 |
gcagttgtcatgattgcggattttatagcagctggagaccaatctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattg |
3207943 |
T |
|
| Q |
230 |
aagtaccggaaacaatgttaaa |
251 |
Q |
| |
|
| ||||| |||| |||||||| |
|
|
| T |
3207944 |
aggtacctgaaattatgttaaa |
3207965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 3215780 - 3215891
Alignment:
| Q |
130 |
gcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgaggacaagacattg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| || ||||| |||| | || |||| ||| ||||| || || ||||||||||||| |
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| T |
3215780 |
gcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccactgagatgtggacaagacattg |
3215879 |
T |
|
| Q |
230 |
aagtaccggaaa |
241 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
3215880 |
aggtacctgaaa |
3215891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 3201870 - 3201976
Alignment:
| Q |
130 |
gcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgaggacaagacattg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||| || || || |||| | ||| |||| ||| ||||| || |||||||||||||| | |
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| T |
3201870 |
gcagtcgtcatgattgctgattttatagctgctggtgaccaatctggatgcgagtttttcaacaaagcagcaatgccactaagatgaggacaagacatcg |
3201969 |
T |
|
| Q |
230 |
aagtacc |
236 |
Q |
| |
|
| ||||| |
|
|
| T |
3201970 |
aggtacc |
3201976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 3219286 - 3219344
Alignment:
| Q |
130 |
gcagttgtcatgattgctgattttatagcggctggagaccaatcagggtgagaactttt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| ||| || |||||| |||| |
|
|
| T |
3219286 |
gcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaattttt |
3219344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 46215290 - 46215258
Alignment:
| Q |
133 |
gttgtcatgattgctgattttatagcggctgga |
165 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
46215290 |
gttgtcatgattgctgattttatagcagctgga |
46215258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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