View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_19 (Length: 303)
Name: NF20105_low_19
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 52344744 - 52344460
Alignment:
| Q |
7 |
agttacaacttattacaaacattacaattaattccattttgcaaataatggctttaagttctgttaaaggcttcttttgtttgctattaattacatgtat |
106 |
Q |
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| T |
52344744 |
agttacaacttattacaaacattacaattaattccattttgcaa-taatggctttaagttctgttaaaggcttcttttgtttgctattaattacatgtat |
52344646 |
T |
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| Q |
107 |
gattgggatgaatacttcagctgagttatcagaaaatttctatggtaaaacttgtccaaaagctgttcgcacaattaggaaagcagtgcaggatgctgtg |
206 |
Q |
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| T |
52344645 |
gattgggatgaatacttcagctgagttatcagaaaatttctatggtaaaacttgtccaaaagctgttcgcacaattaggaaagcagtgcaggatgctgtg |
52344546 |
T |
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| Q |
207 |
atgaatgagagacgtatgggagcatccttgcttcgtctccatttccatgactgctttgtgcaagtaattaattactctcatttctt |
292 |
Q |
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| T |
52344545 |
atgaatgagagacgtatgggagcatccttgcttcgtctccatttccatgactgctttgtgcaagtaattaattactctcatttctt |
52344460 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 9156150 - 9156095
Alignment:
| Q |
225 |
ggagcatccttgcttcgtctccatttccatgactgctttgtgcaagtaattaatta |
280 |
Q |
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| T |
9156150 |
ggagcatccttgcttcgactccattttcaggactgctttgttcaagtaattaatta |
9156095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 10084392 - 10084347
Alignment:
| Q |
228 |
gcatccttgcttcgtctccatttccatgactgctttgtgcaagtaa |
273 |
Q |
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| T |
10084392 |
gcatccttgctccgtcttcatttccatgattgctttgttcaagtaa |
10084347 |
T |
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