View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_2 (Length: 495)
Name: NF20105_low_2
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 21493500 - 21493038
Alignment:
| Q |
17 |
gataggtttggaagaaaagtatcaataattgttgcagataccctctttttactagggtcaattatcttggctgctgctccaaatccagctactctcattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21493500 |
gataggtttggaagaaaagtatcaataattgttgcagataccctctttttactagggtcaattatcttggctgctgctccaaatccagctactctcattg |
21493401 |
T |
|
| Q |
117 |
ttggtcgagtatttgttggtcttggtgtcgggatggcttcaatggcatctcctttgtacatctccgaggcttcaccaactcgagttagaggtgctcttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21493400 |
ttggtcgagtatttgttggtcttggtgtcgggatggcttcaatggcatctcctttgtacatctctgaggcttcaccaactcgagttagaggtgctcttgt |
21493301 |
T |
|
| Q |
217 |
tagtctcaacagttttctcatcactggtggacagttcctttcctatctcatcaacttggcctttactaaggtgcgtgaaactaactacgctgtgtcacat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21493300 |
tagtctcaacagttttctcatcactggtggacagttcctttcctatctcatcaacttggcctttactaaggtgcgtgaaactaactacgctgtgtcgcat |
21493201 |
T |
|
| Q |
317 |
ttcctcttttcgtttctctgtgtcggnnnnnnnnnnncttcacttgatgatgttgtaaaagaatttgaacatgatttttcgctcaggcaccaggcacatg |
416 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21493200 |
ttcctcttttcgtttctatgtgtcggtttttttttttcttcacttgatgatgttgtaaaagaatttgaacatgatttttcgctcaggcaccaggcacatg |
21493101 |
T |
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| Q |
417 |
gaggtggatgttaggagttgcagcagcacctgctgtgatacaaattgtgctcatgttgtcact |
479 |
Q |
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| T |
21493100 |
gaggtggatgttaggagttgcagcagcacctgctgtgatacaaattgtgctcatgttgtcact |
21493038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 21560652 - 21560415
Alignment:
| Q |
39 |
caataattgttgcagataccctctttttactagggtcaattatcttggctgctgctccaaatccagctactctcattgttggtcgagtatttgttggtct |
138 |
Q |
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|||||||| |||||||| | |||||||| | || ||| |||| |||||||||| ||||||||||| ||||||||||||| |||| ||||||||||| |
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| T |
21560652 |
caataattcttgcagatgcactctttttcattggctcagttattatggctgctgcaataaatccagctattctcattgttggtagagtctttgttggtct |
21560553 |
T |
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| Q |
139 |
tggtgtcgggatggcttcaatggcatctcctttgtacatctccgaggcttcaccaactcgagttagaggtgctcttgttagtctcaacagttttctcatc |
238 |
Q |
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|||||| || |||||||||||||| |||||||| || ||||| || |||||||||||| | |||||||| || |||||||||||||| | ||||||||| |
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| T |
21560552 |
tggtgttggaatggcttcaatggcttctcctttatatatctcagaagcttcaccaactagggttagaggagcacttgttagtctcaatggatttctcatc |
21560453 |
T |
|
| Q |
239 |
actggtggacagttcctttcctatctcatcaacttggc |
276 |
Q |
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| T |
21560452 |
actggtggacaattcctttcctatgttatcaacttggc |
21560415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 442
Target Start/End: Complemental strand, 21559809 - 21559766
Alignment:
| Q |
399 |
tcaggcaccaggcacatggaggtggatgttaggagttgcagcag |
442 |
Q |
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| T |
21559809 |
tcaggcaccaggaacatggaggtggatgttaggtgttgcagcag |
21559766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 33115383 - 33115453
Alignment:
| Q |
218 |
agtctcaacagttttctcatcactggtggacagttcctttcctatctcatcaacttggcctttactaaggt |
288 |
Q |
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||||||||| |||||||||||||||| ||||| || || ||||||||||||||||||||||| |||||||| |
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| T |
33115383 |
agtctcaacggttttctcatcactgggggacaatttctctcctatctcatcaacttggccttcactaaggt |
33115453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 33114786 - 33114915
Alignment:
| Q |
48 |
ttgcagataccctctttttactagggtcaattatcttggctgctgctccaaatccagctactctcattgttggtcgagtatttgttggtcttggtgtcgg |
147 |
Q |
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||||||||||||||||||| ||||||| |||| |||||||||| | | || |||| |||||| || || || || ||||| || |||||||| || |
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| T |
33114786 |
ttgcagataccctcttttttatagggtctgctatcatggctgctgcaaccagccctgctattctcatcgtgggccgtgtttttgtcggacttggtgttgg |
33114885 |
T |
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| Q |
148 |
gatggcttcaatggcatctcctttgtacat |
177 |
Q |
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|||||||||||||| ||||| ||||||| |
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| T |
33114886 |
aatggcttcaatggcttctccactgtacat |
33114915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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