View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_20 (Length: 286)
Name: NF20105_low_20
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 4749161 - 4748900
Alignment:
| Q |
9 |
tcgaagaatatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaacttt |
108 |
Q |
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| T |
4749161 |
tcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaacttt |
4749062 |
T |
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| Q |
109 |
ttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749061 |
ttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
4748962 |
T |
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| Q |
209 |
cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatatt |
270 |
Q |
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| T |
4748961 |
cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatatt |
4748900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 4756990 - 4756810
Alignment:
| Q |
18 |
atcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtctct |
117 |
Q |
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|||||||||||||| ||||||||| ||||||| | || ||||||||||| |||| ||| | | ||||||||| ||||||| |||||| | ||||| |
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| T |
4756990 |
atcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctct |
4756891 |
T |
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| Q |
118 |
ttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataa |
198 |
Q |
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| T |
4756890 |
ttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataa |
4756810 |
T |
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