View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_24 (Length: 261)
Name: NF20105_low_24
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 14374031 - 14373797
Alignment:
| Q |
18 |
agaacttgcaaaggccaaaccaacatagacttcaataagagtcgtcccttcaacaggtggctccacatctgctgagatgggagttgcccacgccatccag |
117 |
Q |
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| T |
14374031 |
agaacttgcaaaggccaaaccaacatagacttcaataagagtcgtcccttcaacaggtggctccacatctgctgagatgggagttgcccacgccatccag |
14373932 |
T |
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| Q |
118 |
tagttgcttccaatttgaagagcttgaaaaagaatatgggccaataatatgaatggtacgacagatcctccatatgcagttgtgatatacttccaataca |
217 |
Q |
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| T |
14373931 |
tagttgcttccaatttgaagagcttgaaaaagaatataggccaataatatgaatggtacgacagatcctccatatgcagttgtgatatacttccaataca |
14373832 |
T |
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| Q |
218 |
ccaaaaacccaactttacctttctccctttcttct |
252 |
Q |
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| T |
14373831 |
ccgaaaacccaactttacctttctccctttcttct |
14373797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 41450393 - 41450627
Alignment:
| Q |
18 |
agaacttgcaaaggccaaaccaacatagacttcaataagagtcgtcccttcaacaggtggctccacatctgctgagatgggagttgcccacgccatccag |
117 |
Q |
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| T |
41450393 |
agaacttccaatggcaaaaccaacatagacttcaataagagttgttccttcaacaggtggctcgacttcggctgagatgggagttgcccaagccatccaa |
41450492 |
T |
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| Q |
118 |
tagttgcttccaatttgaagagcttgaaaaagaatatgggccaataatatgaatggtacgacagatcctccatatgcagttgtgatatacttccaataca |
217 |
Q |
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| T |
41450493 |
tagttgcttccaatttgaagagcttgaaaaagaatctgagcgaataatatgaacggtacaagagatcctccatatgcagttgtgatatacttccaataga |
41450592 |
T |
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| Q |
218 |
ccaaaaacccaactttacctttctccctttcttct |
252 |
Q |
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| T |
41450593 |
ctgaaaatccaactttacctttctccctttcttct |
41450627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 41437167 - 41437401
Alignment:
| Q |
18 |
agaacttgcaaaggccaaaccaacatagacttcaataagagtcgtcccttcaacaggtggctccacatctgctgagatgggagttgcccacgccatccag |
117 |
Q |
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||||||| ||| ||| |||||| ||||||||||||||||||| || ||||||||||||||||| || || |||||||||||||||||||| |||||||| |
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| T |
41437167 |
agaacttccaatggcaaaaccaccatagacttcaataagagttgttccttcaacaggtggctcgacttcggctgagatgggagttgcccaagccatccaa |
41437266 |
T |
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| Q |
118 |
tagttgcttccaatttgaagagcttgaaaaagaatatgggccaataatatgaatggtacgacagatcctccatatgcagttgtgatatacttccaataca |
217 |
Q |
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| T |
41437267 |
tagttgcttccaatttgaagagcttgaaaaagaatctgagagaataatatgaacggtacaagagatcctccatatgcagttgtgatatacttccaataga |
41437366 |
T |
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| Q |
218 |
ccaaaaacccaactttacctttctccctttcttct |
252 |
Q |
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| T |
41437367 |
ctgaaaatccaactttacctttctccctttcttct |
41437401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 14239318 - 14239552
Alignment:
| Q |
18 |
agaacttgcaaaggccaaaccaacatagacttcaataagagtcgtcccttcaacaggtggctccacatctgctgagatgggagttgcccacgccatccag |
117 |
Q |
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||||||| ||| |||||||||||||||||||| |||||||| || ||||||| ||||||| ||||| |||||||||||||||||| | |||||||| |
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| T |
14239318 |
agaacttccaatggccaaaccaacatagactttcataagagttgttccttcaatcggtggcttgacatcggctgagatgggagttgccaaagccatccaa |
14239417 |
T |
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| Q |
118 |
tagttgcttccaatttgaagagcttgaaaaagaatatgggccaataatatgaatggtacgacagatcctccatatgcagttgtgatatacttccaataca |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||| |
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| T |
14239418 |
tagttgcttccaatttgaagagcttgaagaagaatatgagccaataatatgaatggtacaagaactcccccatatgcagttgtgatatacttccaataca |
14239517 |
T |
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| Q |
218 |
ccaaaaacccaactttacctttctccctttcttct |
252 |
Q |
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| T |
14239518 |
ctgaaaatccaactttacctttttccctttcttct |
14239552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 252
Target Start/End: Original strand, 22749372 - 22749556
Alignment:
| Q |
68 |
caacaggtggctccacatctgctgagatgggagttgcccacgccatccagtagttgcttccaatttgaagagcttgaaaaagaatatgggccaataatat |
167 |
Q |
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||||||||||||||| |||| |||||||||||||| | |||||||| ||||||||||||||||||||| |||||| | || | || | |||| |
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| T |
22749372 |
caacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgaagaagttgaaacatgatttcagctatcaatac |
22749471 |
T |
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| Q |
168 |
gaatggtacgacagatcctccatatgcagttgtgatatacttccaatacaccaaaaacccaactttacctttctccctttcttct |
252 |
Q |
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|| || || | || ||||||||||| || || ||||| ||||| |||||| |||||||||||||||||| ||| ||||||||| |
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| T |
22749472 |
gagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttct |
22749556 |
T |
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