View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20105_low_25 (Length: 250)

Name: NF20105_low_25
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20105_low_25
NF20105_low_25
[»] chr7 (2 HSPs)
chr7 (18-241)||(3597859-3598082)
chr7 (21-73)||(27962549-27962602)
[»] chr3 (4 HSPs)
chr3 (81-241)||(2251888-2252048)
chr3 (77-241)||(2252444-2252608)
chr3 (36-171)||(49233862-49233997)
chr3 (36-129)||(49234475-49234569)
[»] chr2 (1 HSPs)
chr2 (36-175)||(24455801-24455940)
[»] chr1 (1 HSPs)
chr1 (36-129)||(50862480-50862573)
[»] chr8 (2 HSPs)
chr8 (34-129)||(43228035-43228130)
chr8 (21-73)||(14839088-14839141)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 3598082 - 3597859
Alignment:
Q  18 atattcatattcaatttttgtgcttaactatttggagctggtttaaggtaattttctgaataattcagagcaagttcctggtggttttctgcataattca 117  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3598082 atattcatattcaatgtttttgcttaactatttggagctggtttgaagtaattttctgaataattcagagcaagttcctggtggttttctgcataattca 3597983  T
Q  118 gagctggttttcagtttgtggactgatattgtgcaacagaggtgtttcggtactgcagttgtttcttccgccccttgacaacctctacgcataaagtatt 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3597982 gagctggttttcagttggtggactgatattgtgcaacagaggtgtttcggtactgcagttgtttcttccgccccttgacaccctctacgcataaagtatt 3597883  T
Q  218 taaaagcagcaatgtccttcttct 241  Q
    |||||||| |||||||| ||||||    
T  3597882 taaaagcaacaatgtccatcttct 3597859  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 27962602 - 27962549
Alignment:
Q  21 ttcatattca-atttttgtgcttaactatttggagctggtttaaggtaattttc 73  Q
    |||||||||| || ||||||||||||||||  ||||||||| ||||||||||||    
T  27962602 ttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc 27962549  T

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Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 2251888 - 2252048
Alignment:
Q  81 ttcagagcaagttcctggtggttttctgcataattcagagctggttttcagtttgtggactgatattgtgcaacagaggtgtttcggtactgcagttgtt 180  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2251888 ttcagagcaaattcctagcggttttctgcataattcagagctggttttcagtttgtggactgatattgtgcaacagaggtgtttcggtactgcagttgtt 2251987  T
Q  181 tcttccgccccttgacaacctctacgcataaagtatttaaaagcagcaatgtccttcttct 241  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  2251988 tcttccgccccttgacaccctctacgcataaagtatttaaaagtagcaatgtccttcttct 2252048  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 2252444 - 2252608
Alignment:
Q  77 ataattcagagcaagttcctggtggttttctgcataattcagagctggttttcagtttgtggactgatattgtgcaacagaggtgtttcggtactgcagt 176  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||    
T  2252444 ataattcagagcaaattcctggtggttttctgcataattcagagctggttttcagtttgtggacatcaattgtgcaacataggtgtttcggtactgcagt 2252543  T
Q  177 tgtttcttccgccccttgacaacctctacgcataaagtatttaaaagcagcaatgtccttcttct 241  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  2252544 tgtttcttccgccccttgacaccctctacgcataaagtatttaaaagtagcaatgtccttcttct 2252608  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 49233997 - 49233862
Alignment:
Q  36 tgtgcttaactatttggagctggtttaaggtaattttctgaataattcagagcaagttcctggtggttttctgcataattcagagctggttttcagtttg 135  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||||  |||| || ||  |||| |||||||||||||| ||||||||||||| |  ||    
T  49233997 tgtgcttaactattcagagctggttcaaggtaattttctgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatg 49233898  T
Q  136 tggactgatattgtgcaacagaggtgtttcggtact 171  Q
    |||||| || | ||||| |||  |||||| ||||||    
T  49233897 tggactaatgtagtgcagcagcagtgttttggtact 49233862  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 49234569 - 49234475
Alignment:
Q  36 tgtgcttaactatttggagctggtttaaggtaattttctgaataattcagagcaagttcctggtggttttc-tgcataattcagagctggttttc 129  Q
    ||||||||| ||||  ||||||||| ||||||||||| || ||||||  |||| || ||  |||| ||||| ||||||||| |||||||||||||    
T  49234569 tgtgcttaattattcagagctggttcaaggtaattttatgcataatttggagcgagatcgaggtgattttcttgcataatttagagctggttttc 49234475  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 24455801 - 24455940
Alignment:
Q  36 tgtgcttaactatttggagctggtttaaggtaattttctgaataattcagagcaagttcctggtggttttctgcataattcagagctggttttcagtttg 135  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||||  |||| || ||  |||| |||||||||||||| ||||||||||||| |  ||    
T  24455801 tgtgcttaactattcagagctggttcaaggtaattttctgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatg 24455900  T
Q  136 tggactgatattgtgcaacagaggtgtttcggtactgcag 175  Q
    |||||| || |  ||||||||  |||||| |||| |||||    
T  24455901 tggactaatgtaatgcaacagcagtgttttggtattgcag 24455940  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 50862480 - 50862573
Alignment:
Q  36 tgtgcttaactatttggagctggtttaaggtaattttctgaataattcagagcaagttcctggtggttttctgcataattcagagctggttttc 129  Q
    |||||||| |||||  ||||||||| |||||| ||||||| ||||||  |||| || ||  |||| |||||||||||||| ||||||| |||||    
T  50862480 tgtgcttatctattcagagctggttcaaggtagttttctgcataatttggagcgagatcgaggtgattttctgcataatttagagctgattttc 50862573  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 43228035 - 43228130
Alignment:
Q  34 tttgtgcttaactatttggagctggtttaaggtaattttctgaataattcagagcaagttcctggtggttttctgcataattcagagctggttttc 129  Q
    ||||||||||||||||  ||| ||||| |||||||||||||| ||||||  |||  || ||  |||| |||||||||||||| |||| ||| ||||    
T  43228035 tttgtgcttaactattcagagttggttcaaggtaattttctgcataatttggagtgagatcggggtgattttctgcataatttagagttggctttc 43228130  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 14839088 - 14839141
Alignment:
Q  21 ttcatattca-atttttgtgcttaactatttggagctggtttaaggtaattttc 73  Q
    |||||||||| || ||||||||||||||||  ||||||||| ||||||||||||    
T  14839088 ttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc 14839141  T

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