View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20105_low_5 (Length: 456)
Name: NF20105_low_5
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Original strand, 4749730 - 4750173
Alignment:
| Q |
7 |
gaaatatctttcacaggtatgcgataggtgaattctttcttatcatattaatgattccggtcataagtagaaagtttggccaacaaaagttgatatattt |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
4749730 |
gaaatatctttctcaggtatgcgataggtgaattctttcttatcatattaatgattccggtcataagtagaaagtttggtcaacaaaatttgatatattt |
4749829 |
T |
|
| Q |
107 |
agttgattaaatacatcaaattttgttgatccaaatttctcttatatttaagaccgaagaagtattattattttaacaaagtatttttgcctgaattaaa |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4749830 |
agttgattaaatacattaaattttgttgattcaaatttctcgtatatttaagatcgaagaagtactattattttaacaaagtatttttgcctgaattaaa |
4749929 |
T |
|
| Q |
207 |
aataaccatctttcaactaagttgcatggttatttccaaaatgaaaattatgattttaacatgatatattctacactatagattattgggttatttccaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4749930 |
aataaccatctttcaactaagttgcatggttatttctaaaatgaaaattatgattttaacatgatatattctacactatagattattggcttatttccaa |
4750029 |
T |
|
| Q |
307 |
aataaaacgtatgttttgatatgatatattctacattataggttattgatgagatgctgcgcaaaacaagtatttcatttgcgaactttagacaggcaaa |
406 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4750030 |
aataaaaagtatgttttgatatgatatattctacattataggttattgatgagatgctgcgcaaaacaagtatttcatttgcgaactttagacaggcaaa |
4750129 |
T |
|
| Q |
407 |
agttgattttaacctcaatggttagtcatttcattccatatatt |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4750130 |
agttgattttaacctcaatggttagtcatttcattccatatatt |
4750173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 330 - 451
Target Start/End: Original strand, 4758373 - 4758494
Alignment:
| Q |
330 |
atatattctacattataggttattgatgagatgctgcgcaaaacaagtatttcatttgcgaactttagacaggcaaaagttgattttaacctcaatggtt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| || ||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
4758373 |
atatattctacattataggttattgatgagatgctgcgcataacaacaatctcatttgcaaattttagacgggcaaaagttgatgttaacatcaatggtt |
4758472 |
T |
|
| Q |
430 |
agtcatttcattccatatattc |
451 |
Q |
| |
|
||| ||| |||||||||||||| |
|
|
| T |
4758473 |
agttattccattccatatattc |
4758494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 21576017 - 21576057
Alignment:
| Q |
112 |
attaaatacatcaaattttgttgatccaaatttctcttata |
152 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
21576017 |
attagatacatcaacttttgttgatccaaaattctcttata |
21576057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 17344289 - 17344324
Alignment:
| Q |
117 |
atacatcaaattttgttgatccaaatttctcttata |
152 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17344289 |
atacatcaacttttgttgatccaaatttctcttata |
17344324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 41615733 - 41615695
Alignment:
| Q |
114 |
taaatacatcaaattttgttgatccaaatttctcttata |
152 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
41615733 |
taaatacatcaacttttgttgatccaattttctcttata |
41615695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University