View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_7 (Length: 391)
Name: NF20105_low_7
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_7 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 46283573 - 46283203
Alignment:
| Q |
8 |
aacctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283573 |
aacctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttc |
46283474 |
T |
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| Q |
108 |
atcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283473 |
atcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctg |
46283374 |
T |
|
| Q |
208 |
attcaactttggatctgtaatccttcacaagcacaacatgatcttcattctttctaccttcttccttctgttcaatcgaagaaacaattctccacgcagc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46283373 |
attcaactttggatctgtaatccttcacaagcacaacatgatcttcattctttctaccttcttccttctgttcaatcgaagaaacgattctccacgcagc |
46283274 |
T |
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| Q |
308 |
acgtagcgatccgatcacgttcttgtaagcgacggatatgaggttcctctcttcgacgctaagctctgatg |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283273 |
acgtagcgatccgatcacgttcttgtaagcgacggatatgaggttcctctcttcgacgctaagctctgatg |
46283203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 3898711 - 3898979
Alignment:
| Q |
8 |
aacctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttc |
107 |
Q |
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|||||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
3898711 |
aacctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttc |
3898810 |
T |
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| Q |
108 |
atcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctg |
207 |
Q |
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|||| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| | |
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| T |
3898811 |
atctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactcgg |
3898910 |
T |
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| Q |
208 |
attcaactttggatctgtaatccttcacaagcacaa---catgatcttcattctttctaccttcttcct |
273 |
Q |
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||||||||||||| |||| | ||| ||| |||||| || |||||||||||||||||||||||||| |
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| T |
3898911 |
attcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattctttctaccttcttcct |
3898979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 5042 - 5310
Alignment:
| Q |
8 |
aacctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttc |
107 |
Q |
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|||||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
5042 |
aacctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttc |
5141 |
T |
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| Q |
108 |
atcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctg |
207 |
Q |
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|||| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
5142 |
atctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactctg |
5241 |
T |
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| Q |
208 |
attcaactttggatctgtaatccttcacaagcacaa---catgatcttcattctttctaccttcttcct |
273 |
Q |
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||||||||||||| |||| | ||| ||| |||||| || |||||||||||||||||||||||||| |
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| T |
5242 |
attcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattctttctaccttcttcct |
5310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 27125481 - 27125438
Alignment:
| Q |
70 |
tcttaaactcagccaaatacctatgataatcacctttcatctta |
113 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
27125481 |
tcttaaactcagcaagatacctatgataatcacctttcatctta |
27125438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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