View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_low_8 (Length: 365)
Name: NF20105_low_8
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 1608694 - 1608994
Alignment:
| Q |
20 |
acttacaccatcactgctatgactaaccatcactaagggaatataaaaggtaggagataatgattaagaggactaagaagtttatgagctttgagaaagt |
119 |
Q |
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| T |
1608694 |
acttacaccatcactgctatgactaaccatcactaagggaatagaaaaggtaggagataatgattaagaggaataagaagtttattagctttgataaagt |
1608793 |
T |
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| Q |
120 |
tattgaagagtaaagattgttgtgatctggtctttgaaattgtttttcatgatttagtgagaaatgagtttttatgagattttgtaaagtttgaaatttg |
219 |
Q |
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| T |
1608794 |
tattgaagagtgaagattgttgtgatctggtctttgaaattgtttttcatgatttagtgagaaatgagtttttatgagattttgtaaagtttgaaatttg |
1608893 |
T |
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| Q |
220 |
cagagtaattaaattgaaatttggtaaagtttgaaggttttactatttgtgagacacttttctttttcctcgctatggtcaatgaattataggaaaatgt |
319 |
Q |
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| T |
1608894 |
cagagtaattaaattgaaatttggtaaagtttgaaggttttactatttgtgagacacttttctttttcctcgctatggtcaatgaattataggaaaatgt |
1608993 |
T |
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| Q |
320 |
g |
320 |
Q |
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| T |
1608994 |
g |
1608994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 11091533 - 11091455
Alignment:
| Q |
52 |
ctaagggaatataaaaggtaggagataatgattaagaggactaagaagtttatgagctttgagaaagttattgaagagt |
130 |
Q |
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| T |
11091533 |
ctaagagaataaaaaaggtaagagattgtgattaagaggaagaagaaagtgatgagctttgagaaagtgatggaagagt |
11091455 |
T |
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