View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20106_high_3 (Length: 229)
Name: NF20106_high_3
Description: NF20106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20106_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 31014680 - 31014819
Alignment:
| Q |
16 |
aagaatattccggaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgttatgg |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31014680 |
aagattattccggaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgttatgg |
31014779 |
T |
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| Q |
116 |
gcagttcaaaagtattaagtaacatgacaattcacagttc |
155 |
Q |
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| T |
31014780 |
gcagttcaaaagtattaagtaacatgacaattcacagttc |
31014819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 31015192 - 31015241
Alignment:
| Q |
164 |
taagtaccagtcaaaagatggattcatactcgttgaaacttgggacttta |
213 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
31015192 |
taagtaccagccaaaagagggattcatactcgttgaaacttgggacttta |
31015241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 53063106 - 53063239
Alignment:
| Q |
22 |
attccggaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgttat--gggcag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||| |
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| T |
53063106 |
attccggaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaaagtgcgagcttcaatttgcagaatatgtcatgcgtgcag |
53063205 |
T |
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| Q |
120 |
ttcaaaagtattaagtaacatgacaattcacagt |
153 |
Q |
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| T |
53063206 |
ttcaaaagtattaagtaacatgacaattcacagt |
53063239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 53060127 - 53060257
Alignment:
| Q |
23 |
ttccggaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgttatgggcagttc |
122 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
53060127 |
ttccagaatgcctttcatctcagctcaaaacttacttgtttaagaattatagaggcaaaaagtgcgagcttcaatttgcagaatatgttatgcgcagttc |
53060226 |
T |
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| Q |
123 |
aaaagtattaagtaacatgacaattcacagt |
153 |
Q |
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|||||||||| ||||||||| |||||||||| |
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| T |
53060227 |
aaaagtattatgtaacatgataattcacagt |
53060257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 53072153 - 53072280
Alignment:
| Q |
28 |
gaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgttat--gggcagttcaaa |
125 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||| |
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| T |
53072153 |
gaatgtctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaaagtgcgagcttcaatttgcagaatatgtcatgcgcgcagttcaaa |
53072252 |
T |
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| Q |
126 |
agtattaagtaacatgacaattcacagt |
153 |
Q |
| |
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||||||||||||||||| |||||||||| |
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| T |
53072253 |
agtattaagtaacatgataattcacagt |
53072280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 37419412 - 37419539
Alignment:
| Q |
23 |
ttccggaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgttatgggcagttc |
122 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||| ||||||| |
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| T |
37419412 |
ttccggaatgcctttcatctaagctcaaaacttgcctgtttaaaaattacagaggcaaaaagtgcgagcttcaatttgcagattatgttatgcgcagttc |
37419511 |
T |
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| Q |
123 |
aaaagtattaagtaacatgacaattcac |
150 |
Q |
| |
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||||||||||| || |||||||||||| |
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| T |
37419512 |
aaaagtattaaccaagatgacaattcac |
37419539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 53340697 - 53340642
Alignment:
| Q |
98 |
ttgcagaatatgttatgggcagttcaaaagtattaagtaacatgacaattcacagt |
153 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |
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| T |
53340697 |
ttgcagaatatgttatgcgcagttcaaatgtattgagtaacatgacaattcacagt |
53340642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 53984756 - 53984691
Alignment:
| Q |
88 |
gagcttcaatttgcagaatatgttatgggcagttcaaaagtattaagtaacatgacaattcacagt |
153 |
Q |
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||||| ||||||||||| ||||||||| | ||| ||||||||||||| ||||||||| |||||| |
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| T |
53984756 |
gagctacaatttgcagagtatgttatgcaaaattcgaaagtattaagtaccatgacaatccacagt |
53984691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 6688338 - 6688468
Alignment:
| Q |
23 |
ttccggaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgttatgggcagttc |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||| |
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| T |
6688338 |
ttccagaatgcctttcatctcagctcaaaacttgcttgtttaagaattatagagggaaaaggtgcgagcttcaatttgcagaatatgttatgcacaattc |
6688437 |
T |
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| Q |
123 |
aaaagtattaagtaacatgacaattcacagt |
153 |
Q |
| |
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|||||||||||||||||||| ||||| |||| |
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| T |
6688438 |
aaaagtattaagtaacatgagaattcgcagt |
6688468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 16162521 - 16162442
Alignment:
| Q |
31 |
tgcctttcatctcagctcaaaacttgcttgtttaagaattatagaggcaaaatgtgcgagcttcaatttgcagaatatgt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| |||||||| || | ||| ||||||||||| ||||||| |
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| T |
16162521 |
tgcctttcatctcagctcaaaacttgcttgtttagagattttagaggcagaaagaatgagattcaatttgcaaaatatgt |
16162442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 34036536 - 34036568
Alignment:
| Q |
117 |
cagttcaaaagtattaagtaacatgacaattca |
149 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
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|
| T |
34036536 |
cagttcaaaagtattaagcaacatgacaattca |
34036568 |
T |
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