View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20106_low_1 (Length: 455)
Name: NF20106_low_1
Description: NF20106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20106_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 25281409 - 25281850
Alignment:
| Q |
17 |
attatggcatttaagtactagcacagactgagagtgaatagcaggggtcacgcggaactgttatatgtggtccttttcttttctagtttaataaagaa-- |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25281409 |
attatggcatttaagtactagcacagactgagagtgaatagcaggggtcacgcggaactgttatatgtggtccttttcttttctagtttaataaagaagg |
25281508 |
T |
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| Q |
115 |
--acttgaaaaaaggggaacaagggattggatttggattgaggtgttgggtcagaatgatggaagtggtccttccccttaacttatgggacccactcaac |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25281509 |
aaacttgaaaaaaggggaacaagggattggattgggattgaggtgttgggtcagaatgatggaagtggtccttccccttaacttatgggatccactcaac |
25281608 |
T |
|
| Q |
213 |
tttcaccttactgccactgcatgcctctcttacattgccaatacttgcagtttctttatactatgtgtgattgcataattccatccctctctaggctcac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25281609 |
tttcaccttactgccactgcatgcctctcttacattgccaatacttgcaatttctttatactatgtgtgattgcataattccatccctctctaggctcac |
25281708 |
T |
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| Q |
313 |
cttccaaataaggtcataatcatattggtatgatatatttatttcaaataggtaattcaataattttgtctcttgcaaaaaagtcattgttttgtatcta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25281709 |
cttccaaataaggtcataatcatattggtatgatatatttatttcaaataggtaattcaataattttgtctcttgcaaaaaagtcattattttgtatcta |
25281808 |
T |
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| Q |
413 |
ggtgtaattttagttcctctaattttaatctattttaatcac |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25281809 |
ggtgtaattttagttcctctaattttaatctattttaatcac |
25281850 |
T |
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