View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20106_low_2 (Length: 324)

Name: NF20106_low_2
Description: NF20106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20106_low_2
NF20106_low_2
[»] chr8 (10 HSPs)
chr8 (10-296)||(2059002-2059288)
chr8 (10-200)||(2051941-2052131)
chr8 (10-200)||(2055798-2055991)
chr8 (10-200)||(2029808-2029998)
chr8 (10-200)||(1948035-1948225)
chr8 (10-200)||(10769455-10769645)
chr8 (10-199)||(2034726-2034915)
chr8 (12-199)||(2038806-2038993)
chr8 (10-200)||(2048047-2048237)
chr8 (10-91)||(2030903-2030984)
[»] chr4 (1 HSPs)
chr4 (10-120)||(48904895-48905005)
[»] chr2 (2 HSPs)
chr2 (10-181)||(28734860-28735031)
chr2 (86-119)||(28782875-28782908)
[»] chr1 (2 HSPs)
chr1 (77-123)||(16425472-16425518)
chr1 (77-123)||(16441757-16441803)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 2059002 - 2059288
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059002 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 2059101  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttgaatataatgtg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2059102 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaaagactagatggtacttctgctcttacacatcacatgatttgaatataatgtg 2059201  T
Q  210 gaagaagaaaattattactagatcatataaataagtaaaaatatcagttcatataaatagttgaatgaacttggtgagttcatggtg 296  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059202 gaagaagaaaattattactagctcatattaataagtaaaaatatcagttcatataaatagttgaatgaacttggtgagttcatggtg 2059288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 2051941 - 2052131
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||    
T  2051941 aagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaa 2052040  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttgaa 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  2052041 tacagagaaacttctgttgctgattatgtagcctactttcgagcaaaaggactagatggtacttctgctcttacacattacaagatttgaa 2052131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 2055798 - 2055991
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    ||||||||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||    
T  2055798 aagaatatctgttgcatgctttttctcgacgggacttaaagcatcctcaaagctctatggaccaatgaaggaactgttatcagaagacaatcctcctaaa 2055897  T
Q  110 tacagagaaacttctgttgctgattatgtagc---ctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttgaa 200  Q
    |||| ||||||| |||||||||||||||||||   || ||||||||||||| || |||||||||||||||| |||  ||||||||  |||||||    
T  2055898 tacaaagaaactactgttgctgattatgtagcctactactttcgagcaaaaggagtagatggtacttctgcacttgaacattacaaaatttgaa 2055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 2029808 - 2029998
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    ||||||||||||||||||||||||||||||||| || |   |||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  2029808 aagaatatctgttgcatgctttttctccacaggccttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaacaatcctcccaaa 2029907  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttgaa 200  Q
    |||||||||||  | |||||||||| || ||||| ||||   |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  2029908 tacagagaaaccacagttgctgattttgcagcctactttaatgcaaaaggactagatggtacttctgctcttacacattacaagatttgaa 2029998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 1948225 - 1948035
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    |||||||||||||||||||||||| || ||||| || |   |||| ||||| ||||||||||| ||||||||||||||||||||| | |||||| |||||    
T  1948225 aagaatatctgttgcatgctttttttcaacaggtcttaggccatcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaa 1948126  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttgaa 200  Q
    || ||||||||  | ||||||||||||| ||||| ||||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1948125 tatagagaaaccacagttgctgattatgcagcctactttaaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaa 1948035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 10769455 - 10769645
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    |||||||||||||||||| ||||||| ||| || |  |   |||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||| |    
T  10769455 aagaatatctgttgcatgttttttctgcaccggtcataggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccata 10769554  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttgaa 200  Q
    ||||||||||| || |||||||| ||||||||||  |||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  10769555 tacagagaaacctcagttgctgactatgtagcctattttgaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaa 10769645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 2034726 - 2034915
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    |||||||||||| ||||||||||||| ||||||  | |   |||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| |||    
T  2034726 aagaatatctgtggcatgctttttctgcacaggtattaggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcctaaa 2034825  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttga 199  Q
    |||||||||||  | ||| ||||||||||||| | ||||  |  |||| ||||||||||||||||||||||||||||||||| |||||||    
T  2034826 tacagagaaacaacggtttctgattatgtagcttactttgaaaaaaaaggactagatggtacttctgctcttacacattacaagatttga 2034915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 2038806 - 2038993
Alignment:
Q  12 gaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaata 111  Q
    |||||||||| |||||||||||||||||||| |      |||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  2038806 gaatatctgtagcatgctttttctccacaggtcattggtcatcctcaaagctctatggaccaataaaggatctattatcagaagacaatcctcctaaata 2038905  T
Q  112 cagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttga 199  Q
    |||||||||  | |||||||| ||| |||| | ||||  || |||| || |||||||||||||||||||||||||||||| |||||||    
T  2038906 cagagaaaccacagttgctgactatctagcgtactttgtagaaaaaggattagatggtacttctgctcttacacattacaagatttga 2038993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 2048047 - 2048237
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    |||||||||||| ||| |||||||||| |||||    |   |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||    
T  2048047 aagaatatctgtagcaagctttttctctacaggtaataggtcatcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaa 2048146  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctcttacacattacatgatttgaa 200  Q
    |||||||||||  | ||||| || |||||| ||| ||||  |  |||| || | |||||||||||||||||||||||||||| ||||||||    
T  2048147 tacagagaaaccacagttgcagactatgtaacctactttgtaaaaaaaggattggatggtacttctgctcttacacattacaggatttgaa 2048237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 2030903 - 2030984
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatca 91  Q
    |||||||||||||||||||||||||||| |||| || |   |||  ||| | ||||||| |||||| || ||||||||||||    
T  2030903 aagaatatctgttgcatgctttttctccccaggtcttaggccattgtcagagctctatgtaccaataaaagaactattatca 2030984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 48905005 - 48904895
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    ||||||||||| |||||||||||||| ||  || |  |||  ||| ||||  ||||||||||| || |||||||||||||| ||||||||||||||||||    
T  48905005 aagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaa 48904906  T
Q  110 tacagagaaac 120  Q
    |||||||||||    
T  48904905 tacagagaaac 48904895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 28735031 - 28734860
Alignment:
Q  10 aagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaa 109  Q
    |||||||||||||||||||||||||    ||||||| | ||||  |  ||| || |||||||| || |  ||| |||||||||||||||| ||||||| |    
T  28735031 aagaatatctgttgcatgctttttcaaggcaggacttagagcacatgaaaagctttatggacctataacagaattattatcagaagacaaccctcccaga 28734932  T
Q  110 tacagagaaacttctgttgctgattatgtagcctgctttcgagcaaaacgactagatggtacttctgctctt 181  Q
    || ||||||||  |  |||||||||||||||||| |||  | |||||| | || ||||| ||||||| ||||    
T  28734931 tatagagaaaccacgtttgctgattatgtagcctacttatgtgcaaaagggcttgatggcacttctgttctt 28734860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 28782908 - 28782875
Alignment:
Q  86 ttatcagaagacaatcctcccaaatacagagaaa 119  Q
    |||||||||||||||||||||||||||| |||||    
T  28782908 ttatcagaagacaatcctcccaaatacaaagaaa 28782875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 16425518 - 16425472
Alignment:
Q  77 aaggaactattatcagaagacaatcctcccaaatacagagaaacttc 123  Q
    |||||||||||||| |||||||||||| | ||||| |||||||||||    
T  16425518 aaggaactattatccgaagacaatcctgcaaaatatagagaaacttc 16425472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 16441803 - 16441757
Alignment:
Q  77 aaggaactattatcagaagacaatcctcccaaatacagagaaacttc 123  Q
    |||||||||||||| |||||||||||| | ||||| |||||||||||    
T  16441803 aaggaactattatctgaagacaatcctgcaaaatatagagaaacttc 16441757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University