View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20106_low_5 (Length: 270)
Name: NF20106_low_5
Description: NF20106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20106_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 2718286 - 2718155
Alignment:
| Q |
18 |
aattatagtgatgtataacatacaaatattggtgttggatatgtgagttattagataattgatgcatgga---caaaatatagacaagaaaatatatgaa |
114 |
Q |
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| T |
2718286 |
aattatagtgatgtataacatacaaatattggtgttggatatgtgagttattagataattgatgaatggactccaaaatatagacaagaaaatatatgaa |
2718187 |
T |
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| Q |
115 |
ggagtcattaattcatgatagttgtgaataga |
146 |
Q |
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| T |
2718186 |
ggagtcattaattcatgatagttgtgaataga |
2718155 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 2718169 - 2718079
Alignment:
| Q |
161 |
atagttgtgaatagatttttaacattcaactgcttgnnnnnnncggtatgagattttgaattaattcatacataaatacacacttcggtcct |
252 |
Q |
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| T |
2718169 |
atagttgtgaatagatttttaacattcaactgcttgaaaaaat-ggtatgagattttgaattaattcatacacaaatacacacttcggtcct |
2718079 |
T |
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