View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20106_low_8 (Length: 203)
Name: NF20106_low_8
Description: NF20106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20106_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 56543202 - 56543374
Alignment:
| Q |
16 |
atgaagaggtaattgatcttctaacccaattatattaacattaatatacaatacatacataggagaaat-----caaataggtagccttggttatggata |
110 |
Q |
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| T |
56543202 |
atgaagaggtaattgatcttctaacccaattatattaacattaatatacaatacatacataggagaaatcaaatcaaataggtagccttcgttatggata |
56543301 |
T |
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| Q |
111 |
taatcaacatcttcaatccaattatattattagggatttttctatacatcacaatcaaaatcggtatcaaatc |
183 |
Q |
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| T |
56543302 |
taatcaacatcttcaatccaattatattattagggatttttctatacatcacagtcaaaatcggtatcaaatc |
56543374 |
T |
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