View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20107_high_13 (Length: 437)

Name: NF20107_high_13
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20107_high_13
NF20107_high_13
[»] chr8 (4 HSPs)
chr8 (128-421)||(45055647-45055941)
chr8 (14-84)||(45055955-45056025)
chr8 (210-253)||(17626946-17626989)
chr8 (210-257)||(32152227-32152274)
[»] chr7 (1 HSPs)
chr7 (210-247)||(15091356-15091393)
[»] chr3 (2 HSPs)
chr3 (186-247)||(51763153-51763214)
chr3 (202-246)||(37579545-37579589)
[»] chr6 (3 HSPs)
chr6 (210-248)||(6395796-6395834)
chr6 (189-247)||(6602488-6602546)
chr6 (210-247)||(6427443-6427480)
[»] chr4 (4 HSPs)
chr4 (191-253)||(558991-559053)
chr4 (210-247)||(6007686-6007723)
chr4 (211-296)||(21832988-21833073)
chr4 (186-278)||(1547426-1547518)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 128 - 421
Target Start/End: Complemental strand, 45055941 - 45055647
Alignment:
Q  128 aggtgaggttggtaggcgatggaggaagccaccaagagggttcccacggttgtaggctttgagtgagaatatgaaacggtttgtgatggagaggaagtgt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45055941 aggtgaggttggtaggcgatggaggaagccaccaagagggttcccacggttgtaggctttgagtgagaatatgaaacagtttgtgatggagaggaagtgt 45055842  T
Q  228 ttggagacgagggagagagactccaagtagggactattgttgttgtagtcatcgatgaggaatttgaaggaaggtttacctcaaaag-nnnnnnngagtg 326  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||     
T  45055841 ttggagacgagggagagagactctaagtagggactattgttgttgtagtcatcgatgaggaatttgaaggaaggtttacctcaaaagaaaagaaagagta 45055742  T
Q  327 aaggaagaactacgaacacgttcgttctttctggaccaaagtgaaagtttctttgacttgttcaataagttagggttatccattcaacttcaagt 421  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45055741 aaggaagaactacgaacatgtttgttctttctggaccaaagtgaaagtttctttgacttgttcaataagttagggttatccattcaacttcaagt 45055647  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 45056025 - 45055955
Alignment:
Q  14 ataaaagaaaccctagagagaacacaaagtgataacatacctatcatgcaccgactaatgaacgtacacat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45056025 ataaaagaaaccctagagagaacacaaagtgataacatacctatcatgcaccgactaatgaacgtacacat 45055955  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 17626989 - 17626946
Alignment:
Q  210 gtgatggagaggaagtgtttggagacgagggagagagactccaa 253  Q
    |||||||| ||||||||||||||||| |||||||||||||||||    
T  17626989 gtgatggaaaggaagtgtttggagactagggagagagactccaa 17626946  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 32152227 - 32152274
Alignment:
Q  210 gtgatggagaggaagtgtttggagacgagggagagagactccaagtag 257  Q
    |||||||||||||| |||||||||||||||||||| || | |||||||    
T  32152227 gtgatggagaggaactgtttggagacgagggagagtgaattcaagtag 32152274  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 15091393 - 15091356
Alignment:
Q  210 gtgatggagaggaagtgtttggagacgagggagagaga 247  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15091393 gtgatggagaggaactgtttggagacgagggagagaga 15091356  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 51763214 - 51763153
Alignment:
Q  186 ttgagtgagaatatgaaacggtttgtgatggagaggaagtgtttggagacgagggagagaga 247  Q
    ||||||||||||  ||||||||  |||||||||||||| |||||||| |||| |||||||||    
T  51763214 ttgagtgagaatcggaaacggtgggtgatggagaggaactgtttggaaacgatggagagaga 51763153  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 37579589 - 37579545
Alignment:
Q  202 aacggtttgtgatggagaggaagtgtttggagacgagggagagag 246  Q
    |||||||||||||||||||||| |||||||| || ||||| ||||    
T  37579589 aacggtttgtgatggagaggaactgtttggaaacaagggatagag 37579545  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 6395796 - 6395834
Alignment:
Q  210 gtgatggagaggaagtgtttggagacgagggagagagac 248  Q
    |||||||||||||| || |||||||||||||||||||||    
T  6395796 gtgatggagaggaactgcttggagacgagggagagagac 6395834  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 6602546 - 6602488
Alignment:
Q  189 agtgagaatatgaaacggtttgtgatggagaggaagtgtttggagacgagggagagaga 247  Q
    |||||||||| || || ||| |||| ||||||||| ||||||||||||||||| |||||    
T  6602546 agtgagaataggagacagttggtgacggagaggaaatgtttggagacgagggatagaga 6602488  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 6427443 - 6427480
Alignment:
Q  210 gtgatggagaggaagtgtttggagacgagggagagaga 247  Q
    |||||||||||||| || ||||||||||||||||||||    
T  6427443 gtgatggagaggaactgcttggagacgagggagagaga 6427480  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 558991 - 559053
Alignment:
Q  191 tgagaatatgaaacggtttgtgatggagaggaagtgtttggagacgagggagagagactccaa 253  Q
    ||||||| | |||||||| |||||||||| ||| ||||| ||||| ||||||||||| |||||    
T  558991 tgagaatctaaaacggttcgtgatggagaagaactgttttgagacaagggagagagaatccaa 559053  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 6007686 - 6007723
Alignment:
Q  210 gtgatggagaggaagtgtttggagacgagggagagaga 247  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  6007686 gtgatggagaggaactgtttcgagacgagggagagaga 6007723  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 21833073 - 21832988
Alignment:
Q  211 tgatggagaggaagtgtttggagacgagggagagagactccaagtagggactattgttgttgtagtcatcgatgaggaatttgaag 296  Q
    ||||||||||||| |||||||||||   ||||||||  | ||||||| ||| |||||||| ||  || ||||||| ||||||||||    
T  21833073 tgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcctcgtcgatgatgaatttgaag 21832988  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 1547518 - 1547426
Alignment:
Q  186 ttgagtgagaatatgaaacggtttgtgatggagaggaagtgtttggagacgagggagagagactccaagtagggactattgttgttgtagtca 278  Q
    ||||| ||||||  || |||||| |||||||||||||| ||||||||||| ||||| |  |||| |||||||  || ||||||| ||| ||||    
T  1547518 ttgagagagaatcggagacggttggtgatggagaggaattgtttggagacaagggataatgacttcaagtagccacgattgttgatgttgtca 1547426  T

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