View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_high_27 (Length: 305)
Name: NF20107_high_27
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 36728012 - 36728291
Alignment:
| Q |
16 |
atggtggaattcaggttctactgaccaagagttttcaaacatgaaatatttttcctaaaaatatggaacattcttcggctcacaagagagcaataaagga |
115 |
Q |
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| T |
36728012 |
atggtggaattcaggttctactgaccaagagttttcaaacatgaaatatttttcctaaaaatatggaacattcttcggctcacaagagagcaataaagga |
36728111 |
T |
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| Q |
116 |
taatgataggaagcagtaatagttaagcactctgaaaacatactacaccagttgtttatagtcattgtatggtcgagttacccctccatattca---aat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36728112 |
taatgataggaagcagtaatagttaagcactctgaaaacatactacaccagttgtttatagtcattgtatggtcgagttacccctccatattcaaataat |
36728211 |
T |
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| Q |
213 |
caatcaaacccgcatttgttaatgcctcacggaaacc---attgatgagcttattttgatctatccgtcctgcctcttttt |
290 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| |||||| |
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| T |
36728212 |
caatcaaacccacatttgttaatgcctcacggaaaccaatattgatgagctta-tttgatctatccgccctgccccttttt |
36728291 |
T |
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