View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_high_28 (Length: 300)
Name: NF20107_high_28
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_high_28 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 11163002 - 11162715
Alignment:
| Q |
17 |
atataggttgtagttagcagcagcaaactgaaaaatat----gcatcaaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaaccttt |
112 |
Q |
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| T |
11163002 |
atataggttgtagttagcagcaacaaactgaaaaatatatatgcatcaaaaacgaagttgcagcggctgattcggctgtgactcaaactagcaaaccttt |
11162903 |
T |
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| Q |
113 |
gggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttgattcaagc |
212 |
Q |
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| T |
11162902 |
gggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttaattcaagc |
11162803 |
T |
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| Q |
213 |
aacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcac |
300 |
Q |
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| T |
11162802 |
aacaaagacgaagtttccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcac |
11162715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 11201561 - 11201490
Alignment:
| Q |
229 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcac |
300 |
Q |
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| T |
11201561 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcac |
11201490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 11162779 - 11162657
Alignment:
| Q |
80 |
tgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatct |
179 |
Q |
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| T |
11162779 |
tgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatct |
11162680 |
T |
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| Q |
180 |
gctacaaaagagccaaagctggt |
202 |
Q |
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| T |
11162679 |
gttacaaaagagcctaagctggt |
11162657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 11201554 - 11201432
Alignment:
| Q |
80 |
tgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatct |
179 |
Q |
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| T |
11201554 |
tgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatct |
11201455 |
T |
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| Q |
180 |
gctacaaaagagccaaagctggt |
202 |
Q |
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| T |
11201454 |
gttacaaaagagcctaagctggt |
11201432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 4802856 - 4802779
Alignment:
| Q |
199 |
tggttgattcaagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagc |
276 |
Q |
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| T |
4802856 |
tggttgattcaagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaagc |
4802779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 4802779 - 4802699
Alignment:
| Q |
208 |
caagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgata |
288 |
Q |
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| T |
4802779 |
caagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 4802772 - 4802699
Alignment:
| Q |
59 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgata |
132 |
Q |
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| T |
4802772 |
caaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 4802840 - 4802780
Alignment:
| Q |
59 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaag |
119 |
Q |
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| T |
4802840 |
caaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaag |
4802780 |
T |
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