View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20107_high_3 (Length: 675)
Name: NF20107_high_3
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 9 - 657
Target Start/End: Complemental strand, 10681596 - 10680948
Alignment:
| Q |
9 |
gaggagcagagaaccagatgccgaatgtccccacaaaccaaataggtactaatatgatgtaacctatccactcgtcggttttcgaccaataaaccgaaca |
108 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10681596 |
gaggaacaaagaaccagatgccgaatgtccccacaaaccaaataggtactaatatagtgtaaccaatccactcgtcggttttcgaccaataaaccgaaca |
10681497 |
T |
|
| Q |
109 |
tccaatcgatgatcctagtatgagaaaaatgaatccaagaaatttcataacatcaaacctagaagtcacacctctaacacaatatctcctaaccaataga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10681496 |
tccaatcgatgatcctagtatgagaaaaatgaatccgagaaatttcataacatcaaacctagaagtcacacctctaacacaatatctcctaaccaataga |
10681397 |
T |
|
| Q |
209 |
gacaatgccacaagtgaaaaaaggaacaaagttgaaattgaaagtaaattagcaagaatatcaaggctagtgaaaaatgcaacaatagcagttgcaataa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10681396 |
gacaatgccacaagtgaaaaaaggaacaaagttgaaattgaaagtaaattagcaagaatatcaaggctagtgaaaaatgcaacaatagcagttgcaataa |
10681297 |
T |
|
| Q |
309 |
acataacaacagttgcattaactggtgtcttagnnnnnnnattcactcttgcaagccatgaaggtaacaaacttgttcttgccatgtgtgtgagatacct |
408 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10681296 |
acataacaacagttgcgttaactggtgtcttagtttttttattcactcttgcaagccatgaaggtaacaaacttgttcttgccatgtgtgtgagatatct |
10681197 |
T |
|
| Q |
409 |
tgcctgaccaacagcaccaacaagtaaaacactagtcattcctttcaatgcaccaaatgcaacaatatacttagcccatttcattccaacagcttcaaat |
508 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10681196 |
tgcttgaccaacagcaccaacaagtaaaacactagtcattcctttcaatgcaccaaatgcaacaatatacttagcccatttcattccaacagcttcaaat |
10681097 |
T |
|
| Q |
509 |
gcaaccgaaaaagccgctttttcatcaacatctgaatatttttgcattaaacaaagtgtaacacccatcatgcaataaataaatgttgtaagtgtcattg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10681096 |
gcaaccgaaaaagccgctttttcatcaacatctgaatatttttgcattaaacaaagtgtaacacccatcatgcaataaataaatgttgtaagtgtcattg |
10680997 |
T |
|
| Q |
609 |
atcctattagaccaataggtatatcttttccgggattcttcgtttcctc |
657 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
10680996 |
atcctattagaccaatagggatatcttttccaggattcttcgtttcctc |
10680948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 501
Target Start/End: Original strand, 37119598 - 37119656
Alignment:
| Q |
443 |
gtcattcctttcaatgcaccaaatgcaacaatatacttagcccatttcattccaacagc |
501 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| ||||||||||| | |||||||||||| |
|
|
| T |
37119598 |
gtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagc |
37119656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 501
Target Start/End: Original strand, 37111313 - 37111401
Alignment:
| Q |
413 |
tgaccaacagcaccaacaagtaaaacactagtcattcctttcaatgcaccaaatgcaacaatatacttagcccatttcattccaacagc |
501 |
Q |
| |
|
||||||||||||||||| | ||||| | ||||||||||| || || || |||| |||||| ||||||||||| | |||||||||||| |
|
|
| T |
37111313 |
tgaccaacagcaccaaccaacaaaaccgttgtcattccttttaaagcgcctaatgaaacaatgtacttagcccaatccattccaacagc |
37111401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University