View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_high_33 (Length: 264)
Name: NF20107_high_33
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 23057704 - 23057944
Alignment:
| Q |
18 |
ataagtgatgtatttttatatttatttcttaggtaaacaatgctgccacatgtacacataagaaaatacttgagtatactgctgaagatatagtaactac |
117 |
Q |
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| T |
23057704 |
ataagtgatgtatttttatatttatttgttaggtaaacaatgctgccacatgtacacataagaaaatactagagtatactgctgaagatatagtaactac |
23057803 |
T |
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| Q |
118 |
aatgggtacaaattttgagtctggttaccatctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatcttctgtt |
217 |
Q |
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| T |
23057804 |
aatgggtacaaattttgagtctggttaccatctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatcttctgtt |
23057903 |
T |
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| Q |
218 |
ggaggtttaaaagcatttgatgcttgttctatctgtgctgc |
258 |
Q |
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| T |
23057904 |
ggaggtttaaaagcatttgatgcttgttctatctatgctgc |
23057944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 23035209 - 23035394
Alignment:
| Q |
46 |
ttaggtaaacaatgctgccacatgtacacataagaaaatacttgagtatactgctgaagatatagtaactacaatgggtacaaattttgagtctggttac |
145 |
Q |
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| T |
23035209 |
ttaggtaaacaatgctgcaaaacctacaagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttac |
23035308 |
T |
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| Q |
146 |
catctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatcttctgttggaggtttaaaagc |
231 |
Q |
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| T |
23035309 |
catttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgttcacttcttccgttgcaggtttaaaagc |
23035394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 23026405 - 23026590
Alignment:
| Q |
46 |
ttaggtaaacaatgctgccacatgtacacataagaaaatacttgagtatactgctgaagatatagtaactacaatgggtacaaattttgagtctggttac |
145 |
Q |
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| T |
23026405 |
ttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttac |
23026504 |
T |
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| Q |
146 |
catctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatcttctgttggaggtttaaaagc |
231 |
Q |
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| T |
23026505 |
catttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgttcacttcttccgttgcaggtttaaaagc |
23026590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 23091939 - 23092057
Alignment:
| Q |
92 |
tatactgctgaagatatagtaactacaatgggtacaaattttgagtctggttaccatctttgtcaactagcatacccacttctaaaagaatctggatatg |
191 |
Q |
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| T |
23091939 |
tatactgatgaagatatagcatctacaattggtaccaattttgtgtctagttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatg |
23092038 |
T |
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| Q |
192 |
gaagcatagtgttcatatc |
210 |
Q |
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| T |
23092039 |
gaagcatagtatacatatc |
23092057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 23069127 - 23069248
Alignment:
| Q |
93 |
atactgctgaagatatagtaactacaatgggtacaaattttgagtctggttaccatctttgtcaactagcatacccacttctaaaagaatctggatatgg |
192 |
Q |
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| T |
23069127 |
atactgctgaagatgtgacaaatacaatgggtattaactttgaatctagttaccatttgtgtcaacttgcacacccacttttaaaagaatctggatatgg |
23069226 |
T |
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| Q |
193 |
aagcatagtgttcatatcttct |
214 |
Q |
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| T |
23069227 |
gagcattgtatccatatcttct |
23069248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 30706279 - 30706204
Alignment:
| Q |
143 |
taccatctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatcttctgttg |
218 |
Q |
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| T |
30706279 |
taccatctatgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttg |
30706204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 30790331 - 30790384
Alignment:
| Q |
170 |
cttctaaaagaatctggatatggaagcatagtgttcatatcttctgttggaggt |
223 |
Q |
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| T |
30790331 |
cttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttgcaggt |
30790384 |
T |
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