View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_high_37 (Length: 249)
Name: NF20107_high_37
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 6649460 - 6649356
Alignment:
| Q |
127 |
ttgcaccgatagatctgaaaatgacgtagtttgcgtgcaagtgaagtttgaaaagacgaaaaaacgaatcgtagggtttcggcggagaatggaagttgtt |
226 |
Q |
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| T |
6649460 |
ttgcaccgatagatctgaaaatgacgtagtttgcgtgcaagtgaagtttgaaaagacgaaaaaacgaatcgtagggtttcggcggagaatggaagttgtt |
6649361 |
T |
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| Q |
227 |
agatc |
231 |
Q |
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| T |
6649360 |
agatc |
6649356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6649586 - 6649539
Alignment:
| Q |
1 |
gtcaacaaaaaactctgttaattaacacatttcaaatcacgttacgac |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6649586 |
gtcaacaaaaaactctgttaattaacacatttcaaatcacgttacgac |
6649539 |
T |
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