View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20107_high_40 (Length: 237)

Name: NF20107_high_40
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20107_high_40
NF20107_high_40
[»] chr3 (23 HSPs)
chr3 (1-221)||(4534361-4534572)
chr3 (42-101)||(41159004-41159063)
chr3 (41-108)||(48588559-48588626)
chr3 (45-96)||(24625378-24625429)
chr3 (43-81)||(20874451-20874489)
chr3 (42-108)||(24158611-24158677)
chr3 (45-142)||(25185891-25185990)
chr3 (43-146)||(1395567-1395673)
chr3 (42-145)||(5430921-5431027)
chr3 (42-102)||(37138241-37138301)
chr3 (43-78)||(31526265-31526300)
chr3 (68-138)||(39971240-39971313)
chr3 (42-108)||(48528473-48528539)
chr3 (79-145)||(53848131-53848197)
chr3 (146-220)||(54180767-54180841)
chr3 (45-74)||(8933670-8933699)
chr3 (45-86)||(53131256-53131297)
chr3 (42-75)||(53892008-53892041)
chr3 (43-146)||(24235751-24235857)
chr3 (40-108)||(25964335-25964403)
chr3 (42-82)||(28801145-28801185)
chr3 (42-82)||(37308215-37308255)
chr3 (43-87)||(48049115-48049159)
[»] chr7 (31 HSPs)
chr7 (42-107)||(25507246-25507311)
chr7 (42-81)||(22759064-22759103)
chr7 (42-146)||(5369759-5369864)
chr7 (44-85)||(28702639-28702680)
chr7 (43-133)||(21853197-21853290)
chr7 (52-107)||(25558299-25558354)
chr7 (52-107)||(25558497-25558552)
chr7 (50-88)||(37497904-37497942)
chr7 (44-89)||(2221847-2221892)
chr7 (41-74)||(31691270-31691303)
chr7 (45-102)||(38713204-38713261)
chr7 (42-110)||(25422255-25422323)
chr7 (42-74)||(27708934-27708966)
chr7 (79-146)||(28165023-28165093)
chr7 (51-142)||(35536011-35536105)
chr7 (46-78)||(39630264-39630296)
chr7 (41-81)||(49060419-49060459)
chr7 (45-108)||(5276122-5276185)
chr7 (41-84)||(5630063-5630106)
chr7 (42-144)||(27121656-27121760)
chr7 (46-77)||(31832193-31832224)
chr7 (43-146)||(39539829-39539935)
chr7 (45-87)||(34922839-34922881)
chr7 (44-102)||(39362026-39362084)
chr7 (62-146)||(45813248-45813335)
chr7 (43-88)||(46056137-46056182)
chr7 (105-146)||(48157188-48157229)
chr7 (43-75)||(22551520-22551552)
chr7 (42-82)||(29290250-29290290)
chr7 (42-82)||(47046262-47046302)
chr7 (43-83)||(48496600-48496640)
[»] chr6 (25 HSPs)
chr6 (42-146)||(4006609-4006716)
chr6 (45-80)||(2023781-2023816)
chr6 (46-107)||(7268024-7268085)
chr6 (41-145)||(9668054-9668161)
chr6 (43-79)||(6963209-6963245)
chr6 (44-147)||(27893944-27894050)
chr6 (43-146)||(10400165-10400271)
chr6 (50-108)||(27889952-27890010)
chr6 (41-95)||(31958682-31958736)
chr6 (43-108)||(323492-323557)
chr6 (41-110)||(2732336-2732405)
chr6 (43-88)||(8470117-8470162)
chr6 (45-82)||(9041567-9041604)
chr6 (105-145)||(3204611-3204651)
chr6 (43-83)||(3204691-3204731)
chr6 (40-88)||(3524724-3524772)
chr6 (169-217)||(7931716-7931764)
chr6 (50-106)||(27984061-27984117)
chr6 (83-146)||(29274297-29274363)
chr6 (43-75)||(30865355-30865387)
chr6 (64-108)||(31461595-31461639)
chr6 (40-80)||(31807978-31808018)
chr6 (45-105)||(33217533-33217593)
chr6 (40-68)||(33284135-33284163)
chr6 (44-96)||(33818088-33818140)
[»] chr1 (22 HSPs)
chr1 (42-105)||(41638422-41638485)
chr1 (43-108)||(29046022-29046087)
chr1 (44-108)||(4202238-4202302)
chr1 (43-82)||(2035501-2035540)
chr1 (41-75)||(6933116-6933150)
chr1 (44-89)||(28075668-28075713)
chr1 (42-75)||(32555703-32555736)
chr1 (137-217)||(6292493-6292573)
chr1 (137-201)||(14629972-14630036)
chr1 (43-95)||(29665884-29665936)
chr1 (43-74)||(48146173-48146204)
chr1 (40-98)||(2233291-2233349)
chr1 (43-89)||(35666968-35667013)
chr1 (46-88)||(44236675-44236717)
chr1 (48-134)||(47002954-47003043)
chr1 (43-84)||(12477434-12477475)
chr1 (43-88)||(17631238-17631283)
chr1 (43-84)||(43029548-43029589)
chr1 (42-79)||(52468011-52468048)
chr1 (42-74)||(4019749-4019781)
chr1 (40-76)||(46980284-46980320)
chr1 (41-81)||(49365939-49365979)
[»] chr4 (14 HSPs)
chr4 (43-124)||(19422314-19422398)
chr4 (42-106)||(30079497-30079561)
chr4 (64-145)||(44319867-44319950)
chr4 (45-108)||(7730513-7730576)
chr4 (42-108)||(9843775-9843841)
chr4 (40-74)||(24068801-24068835)
chr4 (43-81)||(24193466-24193504)
chr4 (45-75)||(41162210-41162240)
chr4 (43-81)||(52645572-52645610)
chr4 (44-81)||(9316486-9316523)
chr4 (45-141)||(42321952-42322051)
chr4 (45-89)||(7749225-7749269)
chr4 (43-108)||(20907067-20907134)
chr4 (56-108)||(30207679-30207731)
[»] chr2 (19 HSPs)
chr2 (43-108)||(10150651-10150716)
chr2 (41-79)||(6772690-6772728)
chr2 (42-144)||(40722547-40722650)
chr2 (64-146)||(11513818-11513900)
chr2 (43-88)||(14316963-14317008)
chr2 (44-109)||(26484192-26484257)
chr2 (107-167)||(16451088-16451148)
chr2 (46-88)||(1829645-1829687)
chr2 (69-146)||(10143094-10143174)
chr2 (44-73)||(10285758-10285787)
chr2 (43-76)||(11393522-11393555)
chr2 (43-76)||(11410183-11410216)
chr2 (43-88)||(31740099-31740144)
chr2 (45-81)||(6546873-6546909)
chr2 (43-95)||(7936922-7936974)
chr2 (43-75)||(40851476-40851508)
chr2 (42-82)||(43456835-43456875)
chr2 (42-82)||(43635250-43635290)
chr2 (45-81)||(44869589-44869625)
[»] chr8 (17 HSPs)
chr8 (44-146)||(40868205-40868307)
chr8 (46-87)||(11493871-11493912)
chr8 (43-124)||(40356767-40356851)
chr8 (41-82)||(5088727-5088768)
chr8 (41-74)||(31167864-31167897)
chr8 (41-124)||(26717151-26717235)
chr8 (45-88)||(31884477-31884520)
chr8 (43-81)||(9380014-9380052)
chr8 (43-76)||(6875637-6875670)
chr8 (45-82)||(7008512-7008549)
chr8 (41-82)||(11185105-11185146)
chr8 (43-72)||(12291784-12291813)
chr8 (46-102)||(2093169-2093225)
chr8 (42-82)||(8194088-8194128)
chr8 (45-109)||(11770234-11770298)
chr8 (46-82)||(39866886-39866922)
chr8 (48-76)||(40888451-40888479)
[»] scaffold0221 (1 HSPs)
scaffold0221 (43-141)||(20191-20292)
[»] scaffold0654 (1 HSPs)
scaffold0654 (43-108)||(6746-6812)
[»] scaffold0103 (1 HSPs)
scaffold0103 (42-88)||(51456-51502)
[»] scaffold0024 (2 HSPs)
scaffold0024 (42-108)||(23806-23872)
scaffold0024 (79-146)||(27508-27578)
[»] scaffold0014 (1 HSPs)
scaffold0014 (43-108)||(116665-116731)
[»] chr5 (19 HSPs)
chr5 (77-182)||(11684353-11684459)
chr5 (43-108)||(4855594-4855659)
chr5 (83-146)||(26209481-26209546)
chr5 (42-75)||(30845201-30845234)
chr5 (43-75)||(14257346-14257378)
chr5 (44-88)||(26516180-26516224)
chr5 (44-108)||(40499784-40499848)
chr5 (45-88)||(34198333-34198376)
chr5 (40-75)||(35055090-35055125)
chr5 (40-75)||(35071832-35071867)
chr5 (42-96)||(14959611-14959665)
chr5 (42-88)||(18543341-18543387)
chr5 (42-88)||(20982279-20982325)
chr5 (43-81)||(27565304-27565342)
chr5 (43-81)||(39257537-39257575)
chr5 (41-82)||(18902680-18902721)
chr5 (45-74)||(36638644-36638673)
chr5 (41-88)||(5946816-5946864)
chr5 (68-108)||(27106032-27106072)
[»] scaffold0015 (1 HSPs)
scaffold0015 (43-88)||(69086-69131)
[»] scaffold0590 (1 HSPs)
scaffold0590 (41-81)||(1225-1265)
[»] scaffold0275 (1 HSPs)
scaffold0275 (41-81)||(2710-2750)
[»] scaffold0110 (1 HSPs)
scaffold0110 (41-89)||(3984-4032)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4534572 - 4534361
Alignment:
Q  1 atctcaccaaggtaatgaactgctacgtttcaaatagttttctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttat 100  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4534572 atctcaccaaggtaatgaactgctatttttcaaatagttttctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttat 4534473  T
Q  101 ttata----taaaagatataataaagtcgaattgttttaatataagctattttcgtaagctattttggagaccttacagaaataagctaaaatcaactta 196  Q
    |||||    |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||    
T  4534472 ttatataaataaaagatataataaagtcgaattgttttaata-------------taagctattttggagaccttacagaaataagctaaaatcaactta 4534386  T
Q  197 agaacgtgttataagttgtttctat 221  Q
     ||||||||||||||||||||||||    
T  4534385 cgaacgtgttataagttgtttctat 4534361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 41159004 - 41159063
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatt 101  Q
    |||||||||||| |||||||||||| | ||||| ||||||||||||| ||||||||||||    
T  41159004 ctgtttggataaccaacttaattaaacgcttatcgtataagtgcttatgtataagttatt 41159063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 48588559 - 48588626
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||| ||||||||||||||||||| |||||  |||||| |||||| |||||||||||| |||||    
T  48588559 tctgtttgaataaacaacttaattaagctcttatcatataagagcttacatataagttatttctataa 48588626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 24625429 - 24625378
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataag 96  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  24625429 tttggataagcaacttaattaagcgcttatagcataagtgcttatgtataag 24625378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 20874489 - 20874451
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataa 81  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  20874489 tgtttggataaacaacttaattaagcacttatagcataa 20874451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 24158677 - 24158611
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||| ||||||||||  ||| |  |||||||||||| ||||||||||||| |||||    
T  24158677 ctgtttggataaacaccttaattaagttcttgtcatataagtgcttatgtataagttatttctataa 24158611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 25185891 - 25185990
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaatataa 141  Q
    |||||||||||||||||||||||   ||||  |||||||||||| | ||||| |||||||||   |||||||| ||||||||| ||| ||||| ||||||    
T  25185891 tttggataaacaacttaattaagtgtttatcatataagtgcttatgaataagatatttatataacaaaagata-aataaagtcaaatggtttttatataa 25185989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 1395567 - 1395673
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa---aagatataataaagtcgaattgttttaatat 139  Q
    ||||||||||| || |||  |||||| ||||||| | |||||| || ||||||| ||||| |||||   |||||| ||||||||| |||| |||| ||||    
T  1395567 tgtttggataatcaccttgcttaagcgcttatagcaaaagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatat 1395666  T
Q  140 aagctat 146  Q
    |||||||    
T  1395667 aagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 5430921 - 5431027
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaaaga---tataataaagtcgaattgttttaata 138  Q
    |||||||||||| |||||||||||||  ||||||  ||||||||||| |||||||  |||| ||||| |||   || || |||||| || |||||| |||    
T  5430921 ctgtttggataagcaacttaattaagagcttatatcataagtgcttatgtataagccatttctataacagaaagtaaaagaaagtcaaactgtttttata 5431020  T
Q  139 taagcta 145  Q
    |||||||    
T  5431021 taagcta 5431027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 37138241 - 37138301
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttattt 102  Q
    |||||||||||||||||||||||     ||||||| ||||||||||| |||||||||||||    
T  37138241 ctgtttggataaacaacttaatttgaagcttatagcataagtgcttatgtataagttattt 37138301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 31526265 - 31526300
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagta 78  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31526265 tgtttgggtaaacaacttaattaagcacttatagta 31526300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 39971240 - 39971313
Alignment:
Q  68 cacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaata 138  Q
    |||||||  |||||||||||| |||||||||| ||||||   |||||||| ||||||| | |||||||||||||    
T  39971240 cacttatcatataagtgcttatgtataagttacttatataacaaaagataaaataaagccaaattgttttaata 39971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 48528473 - 48528539
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||||||||||||| |||||||  |||||  ||||||| |||| ||||||| ||||| |||||    
T  48528473 ctgtttggataaacaactgaattaagagcttatcatataagtacttatgtataagctatttctataa 48528539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 53848197 - 53848131
Alignment:
Q  79 taagtgcttacgtataagttatttatataaaagatataataaagtcgaattgttttaatataagcta 145  Q
    ||||||||||| |||||||||||| || || | | | ||||||||| ||||||||| ||||||||||    
T  53848197 taagtgcttacatataagttatttctacaacaaagaaaataaagtcaaattgttttgatataagcta 53848131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 54180841 - 54180767
Alignment:
Q  146 ttttcgtaagctattttggagaccttacagaaataagctaaaatcaacttaagaacgtgttataagttgtttcta 220  Q
    ||||| ||||||||| |||||| |||| | ||||||||||||| ||||||| | || ||| ||||| ||||||||    
T  54180841 ttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataagctgtttcta 54180767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 8933670 - 8933699
Alignment:
Q  45 tttggataaacaacttaattaagcacttat 74  Q
    ||||||||||||||||||||||||||||||    
T  8933670 tttggataaacaacttaattaagcacttat 8933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 53131297 - 53131256
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgct 86  Q
    |||||||||||| ||||||||||||||||| ||||| |||||    
T  53131297 tttggataaacatcttaattaagcacttatggtatacgtgct 53131256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 53892041 - 53892008
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttata 75  Q
    ||||||||||||||| ||||||||||||||||||    
T  53892041 ctgtttggataaacagcttaattaagcacttata 53892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 24235857 - 24235751
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaatat 139  Q
    |||||||||||||||||||||||||   |||||  |||||  |||  ||||||||||||| |||   ||||||||  |||||||| || | ||| |||||    
T  24235857 tgtttggataaacaacttaattaagtgtttataacataagcacttgtgtataagttatttctataacaaaagataatataaagtcaaactatttgaatat 24235758  T
Q  140 aagctat 146  Q
    |||||||    
T  24235757 aagctat 24235751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 25964335 - 25964403
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||| ||||||||||||||||||||  |||||  ||||||| |||  ||||||| ||||| |||||    
T  25964335 ttctgttgggataaacaacttaattaagtgcttatcatataagttcttttgtataagctatttttataa 25964403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 28801145 - 28801185
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||||||||||||||||||||||| ||  ||||||||||    
T  28801145 ctgtttggataaacaacttaattaagtacgaatagtataag 28801185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 37308255 - 37308215
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    ||||||||||||||||||||||||||  ||||||| |||||    
T  37308255 ctgtttggataaacaacttaattaagtgcttatagcataag 37308215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 48049159 - 48049115
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgctt 87  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||    
T  48049159 tgtttggataaacaacataattaagctcttattgtttaagtgctt 48049115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 25507246 - 25507311
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatata 107  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||    
T  25507246 ctgtttggataaacaacttaattaagcacttttaggataagtgtttatgtataagttatttctata 25507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 22759064 - 22759103
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataa 81  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22759064 ctgtttggataaacaacttaattaagcacttatagtataa 22759103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 5369864 - 5369759
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaaagata-taataaagtcgaattgttttaatata 140  Q
    |||||||||||||||| |||||||||||||||    ||||||||||| ||||||| || || ||||||| | | |||||||||| || |||||| |||||    
T  5369864 ctgtttggataaacaatttaattaagcacttagcaaataagtgcttatgtataagctaattctataaaaaaaattaataaagtcaaactgttttcatata 5369765  T
Q  141 agctat 146  Q
     |||||    
T  5369764 tgctat 5369759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 28702639 - 28702680
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgc 85  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  28702639 gtttggataaacaacttaattaagcacttatagcataagtgc 28702680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 21853290 - 21853197
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttt 133  Q
    |||||||||||||| |||||||||  | |||||||||||||| |||  |||||||||||| |||   |||||||| ||||||||  ||||||||    
T  21853290 tgtttggataaacagcttaattaataatttatagtataagtgattatatataagttatttctattacaaaagataaaataaagttaaattgttt 21853197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 25558354 - 25558299
Alignment:
Q  52 aaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatata 107  Q
    ||||||||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||    
T  25558354 aaacaacttaattaagcacttttaggataagtgtttatgtataagttatttctata 25558299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 25558552 - 25558497
Alignment:
Q  52 aaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatata 107  Q
    ||||||||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||    
T  25558552 aaacaacttaattaagcacttttaggataagtgtttatgtataagttatttctata 25558497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 37497942 - 37497904
Alignment:
Q  50 ataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  37497942 ataaacaacttaattaagcacttatagtataagcgctta 37497904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 2221847 - 2221892
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttac 89  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  2221847 gtttggataaacaacttaattaaacacttatagcataagcgcttac 2221892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 31691303 - 31691270
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttat 74  Q
    ||||||||||||||||||||||||||||||||||    
T  31691303 tctgtttggataaacaacttaattaagcacttat 31691270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 38713261 - 38713204
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttattt 102  Q
    ||||||||||||||||||||||||| ||||  |||||||| ||  |||||||||||||    
T  38713261 tttggataaacaacttaattaagcatttatcttataagtgattgtgtataagttattt 38713204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 25422255 - 25422323
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaaa 110  Q
    |||||||||||||||||||||| |||||||| | ||| | | ||| ||||||||| ||||| |||||||    
T  25422255 ctgtttggataaacaacttaatcaagcacttgttgtacatgagctcacgtataagctatttctataaaa 25422323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 27708966 - 27708934
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttat 74  Q
    |||||||||||||||||||||||||||||||||    
T  27708966 ctgtttggataaacaacttaattaagcacttat 27708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 28165023 - 28165093
Alignment:
Q  79 taagtgcttacgtataagttatttatataa---aagatataataaagtcgaattgttttaatataagctat 146  Q
    |||||||||| ||||||||| ||| |||||   |||||| ||| ||||| |||||||||||||||||||||    
T  28165023 taagtgcttatgtataagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctat 28165093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 35536011 - 35536105
Alignment:
Q  51 taaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa---aagatataataaagtcgaattgttttaatataag 142  Q
    |||||||||||||| ||| |||||  |||||  ||||| ||||||| ||||| |||||   |||||| ||||||||| ||||||||| |||||||    
T  35536011 taaacaacttaattgagcgcttatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 39630264 - 39630296
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagta 78  Q
    |||||||||||||||||||||||||||||||||    
T  39630264 ttggataaacaacttaattaagcacttatagta 39630296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 49060419 - 49060459
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataa 81  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  49060419 tctgtttgggtaaacagcttaattaagcacttatagtataa 49060459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 5276122 - 5276185
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||||| |||||||||||||  |||| || |||||||||| ||||||| ||||| |||||    
T  5276122 tttggataaaaaacttaattaagcgtttatcgtttaagtgcttatgtataagctatttttataa 5276185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 5630106 - 5630063
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataagtg 84  Q
    |||||||||||||||||||||||||||  ||||||| |||||||    
T  5630106 tctgtttggataaacaacttaattaagtccttatagaataagtg 5630063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 27121760 - 27121656
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttat---ataaaagatataataaagtcgaattgttttaata 138  Q
    ||||||||||| ||||||||| ||||| |||||  ||||| | |||| ||||||| ||||| |   ||||| |||| ||||||||| ||||||||| |||    
T  27121760 ctgtttggatacacaacttaa-taagcgcttatcatataattccttatgtataagatatttctataataaatgataaaataaagtcaaattgttttcata 27121662  T
Q  139 taagct 144  Q
    ||||||    
T  27121661 taagct 27121656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 77
Target Start/End: Original strand, 31832193 - 31832224
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagt 77  Q
    ||||||||||||||||||||||||||||||||    
T  31832193 ttggataaacaacttaattaagcacttatagt 31832224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 39539935 - 39539829
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttattt--at-ataaaagatataataaagtcgaattgttttaatat 139  Q
    |||||||||||||||||||||||||  |||||  ||||| |||||  ||||||| |||||  || |||||||  | |||||| || ||||||||| ||||    
T  39539935 tgtttggataaacaacttaattaagtgcttatcatataactgcttttgtataagctatttcgataataaaagtgaaaataaattcaaattgttttcatat 39539836  T
Q  140 aagctat 146  Q
    |||||||    
T  39539835 aagctat 39539829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 34922839 - 34922881
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgctt 87  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  34922839 tttggataaacaacttaattaacctcttatagcataagtgctt 34922881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 39362026 - 39362084
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttattt 102  Q
    |||||||||||||  |||||||||||||||||| |||||  |||| ||||||| |||||    
T  39362026 gtttggataaacattttaattaagcacttatagcataagcacttatgtataagctattt 39362084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 45813335 - 45813248
Alignment:
Q  62 attaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaatataagctat 146  Q
    ||||||||||||||| ||| |||||||  |||||| ||||| |||   |||||||| ||||||||| | ||||||| |||||| ||||    
T  45813335 attaagcacttatagcataggtgcttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctat 45813248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 46056182 - 46056137
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||||||||||||||| ||||  | ||||||||||    
T  46056182 tgtttggataaacaacttaattaagcatttatcatttaagtgctta 46056137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 48157229 - 48157188
Alignment:
Q  105 ataaaagatataataaagtcgaattgttttaatataagctat 146  Q
    |||||||||| ||||||||  |||||||||||||||||||||    
T  48157229 ataaaagataaaataaagtgaaattgttttaatataagctat 48157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 22551552 - 22551520
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttata 75  Q
    ||||||||||||||||||||||||||| |||||    
T  22551552 tgtttggataaacaacttaattaagcatttata 22551520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 29290250 - 29290290
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||||||| |||||||||||| ||||||||||| |||||    
T  29290250 ctgtttggatgaacaacttaattcagcacttatagcataag 29290290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 47046302 - 47046262
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    ||||||||||||||||||||||||| |||| || |||||||    
T  47046302 ctgtttggataaacaacttaattaaacactgatggtataag 47046262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 48496600 - 48496640
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagt 83  Q
    |||||||||||||||||| |||||||||||||  |||||||    
T  48496600 tgtttggataaacaacttgattaagcacttatcatataagt 48496640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 4006609 - 4006716
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaata 138  Q
    |||||||||||| |||||||||||| | ||||||| ||||||||||| | ||||| ||||| |||   ||| |||| ||||||||| ||||||||| |||    
T  4006609 ctgtttggataagcaacttaattaatcccttatagcataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttata 4006708  T
Q  139 taagctat 146  Q
    ||||||||    
T  4006709 taagctat 4006716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 2023816 - 2023781
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtata 80  Q
    ||||||||||||||||||||||||||||||||||||    
T  2023816 tttggataaacaacttaattaagcacttatagtata 2023781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 7268085 - 7268024
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatata 107  Q
    ||||||||||||||||||||||   |||||||||||||| |||  |||||||||||| ||||    
T  7268085 ttggataaacaacttaattaagtgtttatagtataagtgtttatttataagttatttttata 7268024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 9668161 - 9668054
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaat 137  Q
    ||||||||||||||||| |||||||| | ||||||  || || |||||  |||||| ||||| |||   ||||||||  ||| |||||||||||||| ||    
T  9668161 tctgtttggataaacaatttaattaaccgcttataacatcagcgcttatatataagctatttgtataacaaaagataacatagagtcgaattgttttcat 9668062  T
Q  138 ataagcta 145  Q
    ||||||||    
T  9668061 ataagcta 9668054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 6963245 - 6963209
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtat 79  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6963245 tgtttggataaacaactaaattaagcacttatagtat 6963209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 27893944 - 27894050
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaaaga---tataataaagtcgaattgttttaatata 140  Q
    |||||||||||||| ||| ||||||  ||||| |||||| | ||| ||||||| ||||| || || |||   || ||||||||| |||||||||||||||    
T  27893944 gtttggataaacaatttacttaagcggttatattataagggtttatgtataagctatttctacaacagaatataaaataaagtcaaattgttttaatata 27894043  T
Q  141 agctatt 147  Q
    | |||||    
T  27894044 aactatt 27894050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 10400165 - 10400271
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagtta-tttat-ataaaagat-ataataaagtcgaattgttttaatat 139  Q
    |||||||||||||||| ||||||||  |||||  ||||| || ||| ||||||| || ||||| ||||||||| | ||||||||| ||||||| | ||||    
T  10400165 tgtttggataaacaacataattaagggcttatcatataaatgtttatgtataagctattttataataaaagataaaaataaagtcaaattgttatcatat 10400264  T
Q  140 aagctat 146  Q
    |||||||    
T  10400265 aagctat 10400271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 27890010 - 27889952
Alignment:
Q  50 ataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||||||||||||||| ||||  ||| |||||||| ||| ||||||||| |||||    
T  27890010 ataaacaacttaattaagcatttatcatatgagtgcttatgtacaagttatttctataa 27889952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 31958736 - 31958682
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataa 95  Q
    ||||||| |||||||||||||||||| | ||||||||| ||| ||||| ||||||    
T  31958736 tctgttttgataaacaacttaattaaacgcttatagtagaagggcttatgtataa 31958682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 323492 - 323557
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||| |||||||||||||||||  ||  |  ||||||||||| ||||||| |||||||||||    
T  323492 tgtttggagaaacaacttaattaagcgttttgaacataagtgcttatgtataagctatttatataa 323557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 2732405 - 2732336
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaaa 110  Q
    |||||||| ||||||||||||||||||||| |||  |  ||||| ||| ||||||| ||||| |||||||    
T  2732405 tctgtttgaataaacaacttaattaagcacctatcatgcaagtgtttatgtataagctatttttataaaa 2732336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 8470162 - 8470117
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||| |||||||||||||||||||  ||||| |||||||||||||    
T  8470162 tgtttagataaacaacttaattaagtgcttatcgtataagtgctta 8470117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 9041604 - 9041567
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  9041604 tttggataaacaacttaattaagcgcttatagcataag 9041567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 3204651 - 3204611
Alignment:
Q  105 ataaaagatataataaagtcgaattgttttaatataagcta 145  Q
    |||||||||| |||||||||||| |||||| ||||||||||    
T  3204651 ataaaagataaaataaagtcgaactgttttcatataagcta 3204611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 3204731 - 3204691
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagt 83  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  3204731 tgtttggataaacaacttaatcaagcgcttatagtgtaagt 3204691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 3524724 - 3524772
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||||||||| ||||||| |||||  | ||||||||||    
T  3524724 ttctgtttggataaacaacttgattaagctcttattatgtaagtgctta 3524772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 7931764 - 7931716
Alignment:
Q  169 cttacagaaataagctaaaatcaacttaagaacgtgttataagttgttt 217  Q
    ||||| |||||||||| ||| |||||||||||| ||| |||||||||||    
T  7931764 cttacggaaataagctgaaaacaacttaagaacatgtcataagttgttt 7931716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 27984061 - 27984117
Alignment:
Q  50 ataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat 106  Q
    ||||||||||||| ||| || ||||  |||||| ||||||||||||| |||||||||    
T  27984061 ataaacaacttaagtaaccatttatcatataagggcttacgtataagctatttatat 27984117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 29274363 - 29274297
Alignment:
Q  83 tgcttacgtataagttatttatata---aaagatataataaagtcgaattgttttaatataagctat 146  Q
    |||||| ||||||| ||||| ||||   ||||||| ||||||||| ||||||||| |||||||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 30865355 - 30865387
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttata 75  Q
    ||||||||||||||||||||||||||| |||||    
T  30865355 tgtttggataaacaacttaattaagcatttata 30865387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 31461595 - 31461639
Alignment:
Q  64 taagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||| ||||||||||||| ||||||| ||||| |||||    
T  31461595 taagcacttattgtataagtgcttatgtataagctatttctataa 31461639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 31808018 - 31807978
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttatagtata 80  Q
    ||||||||||||||||||||||||||||  ||||| |||||    
T  31808018 ttctgtttggataaacaacttaattaagtgcttatggtata 31807978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 33217593 - 33217533
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttata 105  Q
    ||||||||||||  |||||||| ||||||||| | |||||| || |||||| |||||||||    
T  33217593 tttggataaacagtttaattaaccacttatagcagaagtgcatatgtataatttatttata 33217533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 33284135 - 33284163
Alignment:
Q  40 ttctgtttggataaacaacttaattaagc 68  Q
    |||||||||||||||||||||||||||||    
T  33284135 ttctgtttggataaacaacttaattaagc 33284163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 33818140 - 33818088
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttacgtataag 96  Q
    ||||||||| ||||||||||||||   |||||| ||||||||||| |||||||    
T  33818140 gtttggatatacaacttaattaagtgtttatagcataagtgcttatgtataag 33818088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 41638485 - 41638422
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttata 105  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||| |||||| |||||||||    
T  41638485 ctgtttggataaacaacttgattaagcacttatcatataagtgcttatgtataatttatttata 41638422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 29046087 - 29046022
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||  ||||||| ||||| |||||    
T  29046087 tgtttggataaacagattaattaagcacttatcgtataagtgcttgtgtataagatatttctataa 29046022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 4202302 - 4202238
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||||| ||||||||||||||  ||||  |||||||||||| ||||||||||||| |||||    
T  4202302 gtttggataagcaacttaattaagcgtttatcatataagtgcttaagtataagttatttctataa 4202238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 2035540 - 2035501
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  2035540 tgtttggataaataacttaattaagcacttatagtataag 2035501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 6933150 - 6933116
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttata 75  Q
    |||||||||||||||||||||||||||||||||||    
T  6933150 tctgtttggataaacaacttaattaagcacttata 6933116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 28075668 - 28075713
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttac 89  Q
    |||||||||||||| |||||||||||||||||| | ||||||||||    
T  28075668 gtttggataaacaatttaattaagcacttatagcacaagtgcttac 28075713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 32555703 - 32555736
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttata 75  Q
    ||||||||||||||||||||||||||||||||||    
T  32555703 ctgtttggataaacaacttaattaagcacttata 32555736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 6292493 - 6292573
Alignment:
Q  137 tataagctattttcgtaagctattttggagaccttacagaaataagctaaaatcaacttaagaacgtgttataagttgttt 217  Q
    |||||||||||||||||| |||||||||||| ||||   ||||||||| ||| || |||| |||| ||| ||||| |||||    
T  6292493 tataagctattttcgtaaactattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgttt 6292573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 14630036 - 14629972
Alignment:
Q  137 tataagctattttcgtaagctattttggagaccttacagaaataagctaaaatcaacttaagaac 201  Q
    |||||||||||||| |||||||| |||||||| |||  |||||||||| ||| ||||||| ||||    
T  14630036 tataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttatgaac 14629972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 29665936 - 29665884
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataa 95  Q
    |||||||||||||| ||||||||| ||||||||| ||||| ||||| ||||||    
T  29665936 tgtttggataaacagcttaattaaacacttatagcataagcgcttatgtataa 29665884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 48146204 - 48146173
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttat 74  Q
    ||||||||||||||||||||||||||||||||    
T  48146204 tgtttggataaacaacttaattaagcacttat 48146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 2233291 - 2233349
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagtt 98  Q
    |||| ||||||||||| ||||| | |||| ||||| ||||||||||||| |||||||||    
T  2233291 ttctatttggataaacgacttattcaagcgcttatcgtataagtgcttatgtataagtt 2233349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 35667013 - 35666968
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttac 89  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  35667013 tgtttggataaacaacttaattaaacacttatag-ataagcgcttac 35666968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 44236717 - 44236675
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||| |||||| |||||||||||||||||| |||||||||||    
T  44236717 ttggacaaacaagttaattaagcacttatagcataagtgctta 44236675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 47003043 - 47002954
Alignment:
Q  48 ggataaacaacttaattaagcacttatagtataagtgcttacgtataagttattt--at-ataaaagatataataaagtcgaattgtttt 134  Q
    |||||||||| |||||||||||  ||||||||||||| ||| | |||| ||||||  || |||||||||| ||||||||  |||||||||    
T  47003043 ggataaacaatttaattaagcatctatagtataagtgtttatgcataaattatttcgataataaaagataaaataaagttaaattgtttt 47002954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 12477475 - 12477434
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtg 84  Q
    |||||||||||||||||||||||||  || ||||||||||||    
T  12477475 tgtttggataaacaacttaattaagttctgatagtataagtg 12477434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 17631283 - 17631238
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    |||||||||||| | |||||||||||||| ||| ||||||||||||    
T  17631283 tgtttggataaatagcttaattaagcactaatactataagtgctta 17631238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 43029589 - 43029548
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtg 84  Q
    ||||||||||||||| |||||||||||||| ||| |||||||    
T  43029589 tgtttggataaacaatttaattaagcacttttagcataagtg 43029548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 52468011 - 52468048
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtat 79  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  52468011 ctgtttggataaatagcttaattaagcacttatagtat 52468048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 4019781 - 4019749
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttat 74  Q
    ||||||||||||||||||||||| |||||||||    
T  4019781 ctgtttggataaacaacttaatttagcacttat 4019749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 46980320 - 46980284
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttatag 76  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  46980320 ttctgtttggataaacaactaaattaagtacttatag 46980284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 49365979 - 49365939
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataa 81  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  49365979 tctgtttggataaacaacttagttaagcgcttatagcataa 49365939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 19422314 - 19422398
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtc 124  Q
    |||||||||||||| ||||||||||| |||||  ||||| |||||| ||||||||||||| |||   ||||||||||||||||||    
T  19422314 tgtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttatttctataacaaaagatataataaagtc 19422398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 30079561 - 30079497
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat 106  Q
    ||||||||||||||||||||||||||  |||||  | |||||||||| ||||||| |||||||||    
T  30079561 ctgtttggataaacaacttaattaagtccttatcatgtaagtgcttaagtataagctatttatat 30079497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 44319867 - 44319950
Alignment:
Q  64 taagcacttatagtataagtgcttacgtataagttatttatataaaa--gatataataaagtcgaattgttttaatataagcta 145  Q
    |||||||||||  |||||||||| | ||||||  ||||| |||||||  |||| |||||||||||| |||||| ||||||||||    
T  44319867 taagcacttatcatataagtgctcatgtataaactatttctataaaaaagataaaataaagtcgaactgttttcatataagcta 44319950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 7730513 - 7730576
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||||||||||||||||||  ||||| || |||  || ||||||||| |||||    
T  7730513 tttggataaacaacttaattaagcacttattatataaatgtttatctacaagttatttttataa 7730576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 9843841 - 9843775
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||||||||| ||||  |||||  ||||| |||||| ||||||| ||||| |||||    
T  9843841 ctgtttggataaacaacttaaataagtgcttatcatataactgcttatgtataagctatttctataa 9843775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 24068835 - 24068801
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttat 74  Q
    |||||||||||||| ||||||||||||||||||||    
T  24068835 ttctgtttggataatcaacttaattaagcacttat 24068801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 24193466 - 24193504
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataa 81  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  24193466 tgtttggataaacaacttaattgagcacttatagcataa 24193504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 41162240 - 41162210
Alignment:
Q  45 tttggataaacaacttaattaagcacttata 75  Q
    |||||||||||||||||||||||||||||||    
T  41162240 tttggataaacaacttaattaagcacttata 41162210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 52645572 - 52645610
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataa 81  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  52645572 tgtttggataaacaacttaattaagcactaatagcataa 52645610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 9316486 - 9316523
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataa 81  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  9316486 gtttggataaacagcttaattaagcacttatagcataa 9316523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 42322051 - 42321952
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaatataa 141  Q
    ||||||||||||||||| | | || ||||||| ||||||| ||| | ||||| ||||| |||   ||| |||| ||||||||| ||||||||| ||||||    
T  42322051 tttggataaacaacttagtgaggcgcttatagcataagtgtttatgaataagctatttttataacaaatgataaaataaagtcaaattgttttcatataa 42321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 7749269 - 7749225
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttac 89  Q
    |||||||||||||||||| ||||| ||||||| ||||||| ||||    
T  7749269 tttggataaacaacttaactaagctcttatagcataagtgtttac 7749225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 20907067 - 20907134
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttata--gtataagtgcttacgtataagttatttatataa 108  Q
    |||||||||||||  |||||||||||| |||||  ||||||||| ||| ||||||| ||||| |||||    
T  20907067 tgtttggataaactgcttaattaagcatttatagcgtataagtgtttatgtataagctatttgtataa 20907134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 30207731 - 30207679
Alignment:
Q  56 aacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||||||||||||||  |||||||||||| ||||| |||| || |||||    
T  30207731 aacttaattaagcacttatcatataagtgcttatgtatatgttagttctataa 30207679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 10150651 - 10150716
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||| ||||||||||||||||||||||||||  |||||||| ||| ||||||||||||| |||||    
T  10150651 tgtttagataaacaacttaattaagcacttattatataagtgtttatgtataagttatttctataa 10150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 6772728 - 6772690
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtat 79  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6772728 tctgtttggataaacaacttaattaagcacttatagtat 6772690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 40722650 - 40722547
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa-aagatataataaagtcgaattgttttaatata 140  Q
    |||||||||||||||||||||| |||  ||||| ||||  ||||||| | ||||| | ||| ||||| || ||| |||||||||||| |||||| |||||    
T  40722650 ctgtttggataaacaacttaatcaagtgcttattgtatgtgtgcttatgcataagctttttttataacaaaataaaataaagtcgaactgttttcatata 40722551  T
Q  141 agct 144  Q
    ||||    
T  40722550 agct 40722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 11513818 - 11513900
Alignment:
Q  64 taagcacttatagtataagtgcttacgtataagttatttatataaaagatataataaagtcgaattgttttaatataagctat 146  Q
    |||||||||||  |||||| | ||| ||||||||||||   | |||||||| ||||||||| ||||||||| |||||||||||    
T  11513818 taagcacttatcatataagggtttatgtataagttattacaacaaaagataaaataaagtcaaattgttttcatataagctat 11513900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 14317008 - 14316963
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||    
T  14317008 tgtttggataaacaaattaattaagcgcttatagcataagtgctta 14316963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 26484257 - 26484192
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaa 109  Q
    ||||||||||||||||||||||| || ||||  |||||||||||| | ||||| ||||| ||||||    
T  26484257 gtttggataaacaacttaattaatcatttatcatataagtgcttatggataagctatttctataaa 26484192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 16451088 - 16451148
Alignment:
Q  107 aaaagatataataaagtcgaattgttttaatataagctattttcgtaagctattttggaga 167  Q
    |||||||| ||| ||||  ||||||||| ||||||||| |||||||||||||| |||||||    
T  16451088 aaaagataaaatgaagttaaattgttttcatataagctgttttcgtaagctatcttggaga 16451148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 1829645 - 1829687
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||    
T  1829645 ttggataaacagcttaattaagcactgataatataagtgctta 1829687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 10143094 - 10143174
Alignment:
Q  69 acttatagtataagtgcttacgtataagttatttatat---aaaagatataataaagtcgaattgttttaatataagctat 146  Q
    |||||| | ||||||||||| ||||||||||||| |||   |||||||| ||| ||||| || |||||| |||||||||||    
T  10143094 acttatcgaataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctat 10143174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 10285758 - 10285787
Alignment:
Q  44 gtttggataaacaacttaattaagcactta 73  Q
    ||||||||||||||||||||||||||||||    
T  10285758 gtttggataaacaacttaattaagcactta 10285787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 11393555 - 11393522
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatag 76  Q
    |||||||||||||| |||||||||||||||||||    
T  11393555 tgtttggataaacagcttaattaagcacttatag 11393522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 11410216 - 11410183
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatag 76  Q
    |||||||||||||| |||||||||||||||||||    
T  11410216 tgtttggataaacagcttaattaagcacttatag 11410183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 31740144 - 31740099
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    |||||| ||||| | ||||||||||||||| |||||||||||||||    
T  31740144 tgtttgtataaatagcttaattaagcacttttagtataagtgctta 31740099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 6546873 - 6546909
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataa 81  Q
    |||||||||||| |||||| |||||||||||||||||    
T  6546873 tttggataaacagcttaatcaagcacttatagtataa 6546909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 7936922 - 7936974
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataa 95  Q
    |||||||||||||||||||||||||  ||| ||  ||||||||||| ||||||    
T  7936922 tgtttggataaacaacttaattaagtgcttttaacataagtgcttatgtataa 7936974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 40851476 - 40851508
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttata 75  Q
    ||||||||||||||||||||||||| |||||||    
T  40851476 tgtttggataaacaacttaattaagtacttata 40851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 43456875 - 43456835
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||| |||||| ||||||||||||||||||||| |||||    
T  43456875 ctgtttcgataaaaaacttaattaagcacttatagcataag 43456835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 43635290 - 43635250
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||| |||||||| ||||||||||||||||||| |||||    
T  43635290 ctgtttagataaacagcttaattaagcacttatagcataag 43635250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 44869625 - 44869589
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataa 81  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  44869625 tttggataaacaacttaattaagcacttttagcataa 44869589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 40868307 - 40868205
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaa-agatataataaagtcgaattgttttaatataag 142  Q
    |||||| |||||||||||||||||| |||| | | |||||||||| ||||||| ||||| | |||| | | | ||||||||||||||||||| |||||||    
T  40868307 gtttgggtaaacaacttaattaagcgcttaca-tgtaagtgcttatgtataagctatttctgtaaataaaaaaaataaagtcgaattgttttcatataag 40868209  T
Q  143 ctat 146  Q
    ||||    
T  40868208 ctat 40868205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 11493871 - 11493912
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagtataagtgctt 87  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  11493871 ttggataaacagcttaattaagcacttatagtataagtgctt 11493912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 40356767 - 40356851
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttat---ataaaagatataataaagtc 124  Q
    |||||| ||||||||||||||||| ||||| |  ||||||||||||  |||||| |||||||   |||||||||| |||||||||    
T  40356767 tgtttgaataaacaacttaattaaacacttgtcatataagtgcttatctataagctatttatataataaaagataaaataaagtc 40356851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 5088727 - 5088768
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  5088727 tctgtttggataaacaacttacttatgcacttatagtataag 5088768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 31167864 - 31167897
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttat 74  Q
    ||||||||||||||||||||||||||||||||||    
T  31167864 tctgtttggataaacaacttaattaagcacttat 31167897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 26717151 - 26717235
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa-aagatataataaagtc 124  Q
    ||||||||||| |||| |||||||||||||||||  |||||||||||  | ||||| || || ||||| |||||| |||||||||    
T  26717151 tctgtttggatcaacagcttaattaagcacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtc 26717235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 31884477 - 31884520
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||    
T  31884477 tttggataaacaactcaattaagcacttatagcataagcgctta 31884520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 9380014 - 9380052
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataa 81  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  9380014 tgtttggataaataacttaattaagcgcttatagtataa 9380052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 6875670 - 6875637
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatag 76  Q
    ||||||||||||| ||||||||||||||||||||    
T  6875670 tgtttggataaaccacttaattaagcacttatag 6875637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 7008512 - 7008549
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  7008512 tttggataaacaacttaattaagcgcttatagcataag 7008549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 11185105 - 11185146
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  11185105 tctgtttggaaaaacaacttaatgaagcacttataatataag 11185146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 12291813 - 12291784
Alignment:
Q  43 tgtttggataaacaacttaattaagcactt 72  Q
    ||||||||||||||||||||||||||||||    
T  12291813 tgtttggataaacaacttaattaagcactt 12291784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 2093169 - 2093225
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttattt 102  Q
    ||||| ||||||||||||||||| ||||| | ||||||||||| | |||||| ||||    
T  2093169 ttggacaaacaacttaattaagcgcttatcgcataagtgcttatgaataagtcattt 2093225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 8194128 - 8194088
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||| |||||||||||||||||||| ||||||| |||||    
T  8194128 ctgtttagataaacaacttaattaagcccttatagcataag 8194088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 11770298 - 11770234
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataaa 109  Q
    ||||||||||||||||||||||  ||||||||  |||||| ||| | ||||| ||||| ||||||    
T  11770298 tttggataaacaacttaattaaaaacttatagcttaagtgtttatgcataagatatttttataaa 11770234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 39866922 - 39866886
Alignment:
Q  46 ttggataaacaacttaattaagcacttatagtataag 82  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  39866922 ttggataaacaacttaattaagcacctatagcataag 39866886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 40888451 - 40888479
Alignment:
Q  48 ggataaacaacttaattaagcacttatag 76  Q
    |||||||||||||||||||||||||||||    
T  40888451 ggataaacaacttaattaagcacttatag 40888479  T

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Target: scaffold0221 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 20191 - 20292
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttat---ataaaagatataataaagtcgaattgttttaatat 139  Q
    |||||||||||| | |||||| |||||| ||||| |||||||| || ||||||||||||| |   |||||| ||| ||||| ||| ||||||||| ||||    
T  20191 tgtttggataaatagcttaatcaagcacgtatagcataagtgcgtatgtataagttatttctttaataaaacataaaataatgtcaaattgttttcatat 20290  T
Q  140 aa 141  Q
    ||    
T  20291 aa 20292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 6812 - 6746
Alignment:
Q  43 tgtttggataaacaacttaat-taagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||| ||||||  ||||| |||||    
T  6812 tgtttggataaacaacttaatataagcacttatcatataagtgcttatgtataaactatttctataa 6746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 51456 - 51502
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||    
T  51456 ctgtttggataaacttcttaattaatcacttatagtataagtgctta 51502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 23806 - 23872
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||||||||||||| |||||||  || ||| |||||| |||||| ||||| |||||    
T  23806 ctgtttggataaacaacttaattaaacacttatcataaaagcgcttacatataagctatttctataa 23872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 27508 - 27578
Alignment:
Q  79 taagtgcttacgtataagttatttatataa---aagatataataaagtcgaattgttttaatataagctat 146  Q
    |||||||||| ||||||||||||| |||||   |||||| ||||||||| ||||||||| |||||| ||||    
T  27508 taagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactat 27578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 116731 - 116665
Alignment:
Q  43 tgtttggataaacaacttaat-taagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||| ||||||  ||||| |||||    
T  116731 tgtttggataaacaacttaatataagcacttatcatataagtgcttatgtataaactatttctataa 116665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 11684353 - 11684459
Alignment:
Q  77 tataagtgcttacgtataagttatttatataa-aagatataataaagtcgaattgttttaatataagctattttcgtaagctattttggagaccttacag 175  Q
    |||||||||| | ||||||| ||||| ||||| || |||||| | |||  || |||||| ||||||||||||||| ||||||||  |||||| ||||| |    
T  11684353 tataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagagcttacgg 11684452  T
Q  176 aaataag 182  Q
    |||||||    
T  11684453 aaataag 11684459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 4855594 - 4855659
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||||||||||||||||||||  |||||||| |||||| |||| |||| || ||||| |||||    
T  4855594 tgtttggataaacaacttaattaaatacttatagcataagtacttatgtattagctatttttataa 4855659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 26209546 - 26209481
Alignment:
Q  83 tgcttacgtataagttatttatataa-aagatataataaagtcgaattgtttt-aatataagctat 146  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||| ||||||||| ||||||||||||    
T  26209546 tgcttatgtataagttatttctataacaagataaaataaagtccaattgttttcaatataagctat 26209481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 30845201 - 30845234
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttata 75  Q
    ||||||||||||||||||||||||||||||||||    
T  30845201 ctgtttggataaacaacttaattaagcacttata 30845234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 14257346 - 14257378
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttata 75  Q
    |||||||||||||||||||||||||||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttata 14257378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 26516180 - 26516224
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgctta 26516224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 40499848 - 40499784
Alignment:
Q  44 gtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatataa 108  Q
    |||||||||||||||||||||||   |||||  |||||||||||| ||| ||||||||| |||||    
T  40499848 gtttggataaacaacttaattaaaagcttatcatataagtgcttatgtacaagttatttctataa 40499784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 34198333 - 34198376
Alignment:
Q  45 tttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||    
T  34198333 tttggataatcaacttaattaagcacttatcatataagtgctta 34198376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 35055090 - 35055125
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttata 75  Q
    |||||||||| |||||||||||||||||||||||||    
T  35055090 ttctgtttgggtaaacaacttaattaagcacttata 35055125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 35071832 - 35071867
Alignment:
Q  40 ttctgtttggataaacaacttaattaagcacttata 75  Q
    |||||||||| |||||||||||||||||||||||||    
T  35071832 ttctgtttgggtaaacaacttaattaagcacttata 35071867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 14959611 - 14959665
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataag 96  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||  |||||||||||    
T  14959611 ctgttgggataaacaacttaattaaacacttataacataagtatttacgtataag 14959665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 18543387 - 18543341
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    |||||||||||||||||||||| | || |||||||||||||| ||||    
T  18543387 ctgtttggataaacaacttaataacgcccttatagtataagtactta 18543341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 20982325 - 20982279
Alignment:
Q  42 ctgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||    
T  20982325 ctgtttggataaacaacttcattaagtgcttatagcataagtgctta 20982279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 27565342 - 27565304
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataa 81  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  27565342 tgtttggataaacagcttaattaagcgcttatagtataa 27565304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 39257575 - 39257537
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataa 81  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  39257575 tgtttggataaacaacttaattaagcgcttatagcataa 39257537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 18902680 - 18902721
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataag 82  Q
    |||||||| ||||||||||||||||| |||||||||| ||||    
T  18902680 tctgtttgaataaacaacttaattaatcacttatagtgtaag 18902721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 36638644 - 36638673
Alignment:
Q  45 tttggataaacaacttaattaagcacttat 74  Q
    ||||||||||||||||||||||||||||||    
T  36638644 tttggataaacaacttaattaagcacttat 36638673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 5946864 - 5946816
Alignment:
Q  41 tctgtttggataaacaactt-aattaagcacttatagtataagtgctta 88  Q
    |||||||||||||||||||| ||||||| ||||| || |||||||||||    
T  5946864 tctgtttggataaacaacttaaattaagtacttaaagcataagtgctta 5946816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 27106072 - 27106032
Alignment:
Q  68 cacttatagtataagtgcttacgtataagttatttatataa 108  Q
    ||||||| |||||||||||||||||||||| |||| |||||    
T  27106072 cacttattgtataagtgcttacgtataagtcatttctataa 27106032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 69131 - 69086
Alignment:
Q  43 tgtttggataaacaacttaattaagcacttatagtataagtgctta 88  Q
    |||||||||||||||||| |||||||||||| || ||||| |||||    
T  69131 tgtttggataaacaacttcattaagcacttaaagcataagcgctta 69086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 1265 - 1225
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataa 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||    
T  1265 tctgtgtggataaacaacttaattaagtacttatagcataa 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 2710 - 2750
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataa 81  Q
    ||||| ||||||||||||||||||||| |||||||| ||||    
T  2710 tctgtgtggataaacaacttaattaagtacttatagcataa 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 3984 - 4032
Alignment:
Q  41 tctgtttggataaacaacttaattaagcacttatagtataagtgcttac 89  Q
    ||||||||||||||||||||||| |||   ||||||||||||| |||||    
T  3984 tctgtttggataaacaacttaatgaagtgtttatagtataagtacttac 4032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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