View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20107_high_7 (Length: 527)
Name: NF20107_high_7
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Complemental strand, 18583700 - 18583204
Alignment:
| Q |
17 |
cataggggccaatacgaagcacagcaaaaagtccttcatcttgaatagttttgagaaatctaatgagatcgttattgccactaaaatcatactcacgacg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18583700 |
cataggggccaatacgaagcacagcaaaaagtccttcatcttgaatagttttgagaaatctaatgagatcgttattgccactaaaatcatactcacgacg |
18583601 |
T |
|
| Q |
117 |
aattggttcatgtgcattccaaaaaacatatgtttcaattgcatccaatccaccttcttttgctctcttaatcaaatcaggccacatctaatataaaaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18583600 |
aattggttcatgtgcattccaaaaaacatatgtttcaattgcatccaatccaccttcttttgctttcttaatcaaatcaggccacatctaatataaaaca |
18583501 |
T |
|
| Q |
217 |
aataaaatacacatttagcatataat----taatggagaaacatgtatttaggtcnnnnnnnnnnnnntaatattaattacttacttgaggtgtgcttct |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18583500 |
aataaaatacacatttagcatataattaattaatggagtaacatgtatttaggtc-aaaaagaaaaaataatattaattacttacttgaggtgtgcttct |
18583402 |
T |
|
| Q |
313 |
aggataatggattgatccagaaataagaacccttcttttgccatcaattttgatggctcttccatcatgagaaacttcaacagcataaattccacataaa |
412 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
18583401 |
aggatagtggattgatccagaaataagaacccttcttttgccatcgattttgatggctcttccatcatgagaaacttcaacagcataagttccatataga |
18583302 |
T |
|
| Q |
413 |
gcaaggaaaatataacaaaggaataagggaaaagcaaataatcttagagaagccattttcggttgtgaattattcagtgtctttcagaatgaagcaagtg |
512 |
Q |
| |
|
|||||||||||||| |||||||| || |||||| |||| | ||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
18583301 |
gcaaggaaaatatagcaaaggaaaaaaggaaaaacaaa-acactt--agaagccattttcgtttgtgaattattcagtgtgtttgagaatgaagcaagtg |
18583205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University