View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_1 (Length: 768)
Name: NF20107_low_1
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 19 - 756
Target Start/End: Original strand, 28093815 - 28094555
Alignment:
| Q |
19 |
attcgtgtttgcaccaatggttcatagactctgcccccaacatccatcaagtctatttggttaaagcacttttgtcacatttcatcatagatacgcattc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28093815 |
attcgtgtttgcaccaatggttcatagactctgcccccaacatccatcaagtctatttggttaaagcacttttgtcacatttcatcatagatacgcattc |
28093914 |
T |
|
| Q |
119 |
aaccggagcaaatgtgaaggggattcaaaatataaactt---aaatgtggtattgttgcattacaatattacataaagaggattttgatagatgtctaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||| || | || | | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28093915 |
aaccggagcaaatgtgaaggggattcaaaatataatctatcaacattttattttgttgcattacaatattacataaagaggattttgatagatgtctaat |
28094014 |
T |
|
| Q |
216 |
aatctatcaacattttattttgctttctgttaagcatgaagagtgttagtgtggctaattttttcatggaatgtttaattgacccttttattctagtaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094015 |
aatctatcaacattttattttgctttctgttaagcatgaagagtgttagtgtggctaattttttcatggaatgtttaattgacccttttattctagtaac |
28094114 |
T |
|
| Q |
316 |
ctctatttccaacaaatgcatgcatgcaagaataaatatatatgcacaaatatgacaccacatcgcaaactgttgcttatatatacacaaacaatcaaac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094115 |
ctctatttccaacaaatgcatgcatgcaagaataaatatatatgcacaaatatgacaccacatcgcaaactgttgcttatatatacacaaacaatcaaac |
28094214 |
T |
|
| Q |
416 |
acaatacataataattgattcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaa |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094215 |
acaatacataataattgattcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaa |
28094314 |
T |
|
| Q |
516 |
tatctgcaacttatcaccacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaaca |
615 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28094315 |
tatctgcaacttatcaccacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacgcataaaaca |
28094414 |
T |
|
| Q |
616 |
gggttatcaggaacaggcgtaacagtattctcaactctataaaagtattttctagacacaacatgttcctgctggctcaaatacttcatattactctcaa |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28094415 |
gggttatcaggaacaggcgtaacagtattctcaactctataaaagtattttctagacacaacatgttcctgttggctcaaatacttcatattactctcaa |
28094514 |
T |
|
| Q |
716 |
actttgttaatggcaaatctgtgttaatccaattgtccctt |
756 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094515 |
actttgttaatggcaaatctgtgttaatccaattgtccctt |
28094555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 433 - 665
Target Start/End: Complemental strand, 26156525 - 26156293
Alignment:
| Q |
433 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
532 |
Q |
| |
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||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||| | ||| | | |||| |
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| T |
26156525 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26156426 |
T |
|
| Q |
533 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
632 |
Q |
| |
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|| | || |||| |||||||||| ||| |||| || ||||||| |||||||||| || |||||||||||||| |||||||||||||| | || || |
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| T |
26156425 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26156326 |
T |
|
| Q |
633 |
cgtaacagtattctcaactctataaaagtattt |
665 |
Q |
| |
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||||| |||||||| || |||||||| ||||| |
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| T |
26156325 |
agtaaccgtattctccaccctataaaaatattt |
26156293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 433 - 665
Target Start/End: Complemental strand, 26169823 - 26169591
Alignment:
| Q |
433 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
532 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||| | ||| | | |||| |
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| T |
26169823 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26169724 |
T |
|
| Q |
533 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
632 |
Q |
| |
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|| | || |||| |||||||||| ||| |||| || ||||||| |||||||||| || |||||||||||||| |||||||||||||| | || || |
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| T |
26169723 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26169624 |
T |
|
| Q |
633 |
cgtaacagtattctcaactctataaaagtattt |
665 |
Q |
| |
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||||| |||||||| || |||||||| ||||| |
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| T |
26169623 |
agtaaccgtattctccaccctataaaaatattt |
26169591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 55164544 - 55164595
Alignment:
| Q |
439 |
gctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaat |
490 |
Q |
| |
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||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55164544 |
gcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaat |
55164595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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