View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20107_low_10 (Length: 451)
Name: NF20107_low_10
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_10 |
 | |
|
| [»] scaffold0515 (2 HSPs) |
| | |
|
| [»] scaffold0317 (2 HSPs) |
| | |
|
| [»] scaffold0306 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0515 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 192 - 442
Target Start/End: Original strand, 125 - 375
Alignment:
| Q |
192 |
cttcacttaagatggattttctgctcctattcaatgtctcgacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
291 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
125 |
cttcgcttaagatggattttctgctcctattcaatgtctggacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
224 |
T |
|
| Q |
292 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcagtattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcaatattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
324 |
T |
|
| Q |
392 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
325 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 1 - 62
Alignment:
| Q |
124 |
gtctgaggacgggaagccatgatgtcctctgaatcatcttcctctccataaatataaatggg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1 |
gtctgaggacgggaagccatgatgtcctctgaatcgtcttcctctccataaatataaatggg |
62 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 192 - 442
Target Start/End: Complemental strand, 19082 - 18832
Alignment:
| Q |
192 |
cttcacttaagatggattttctgctcctattcaatgtctcgacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
291 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19082 |
cttcgcttaagatggattttctgctcctattcaatgtctggacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
18983 |
T |
|
| Q |
292 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcagtattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcaatattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
18883 |
T |
|
| Q |
392 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18882 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
18832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 19325 - 19145
Alignment:
| Q |
18 |
gacagaacaaatatgaatgcgaaagagggtgagcaccgcggtgacggtgagatgagatggtgatagatgacgttaatggtgttca-------------ga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19325 |
gacagaacaaatatgaatgcgaaagagggtgagcacggcggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagatttgaggtgagga |
19226 |
T |
|
| Q |
105 |
tggtaatgacgacggtgaggtctgaggacgggaagccatgatgtcctctgaatcatcttcctctccataaatataaatggg |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19225 |
tggtaatgacggcggtgaggtctgaggacgggaagccatgatgtcctctgaatcgtcttcctctccataaatataaatggg |
19145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 192 - 442
Target Start/End: Original strand, 127 - 377
Alignment:
| Q |
192 |
cttcacttaagatggattttctgctcctattcaatgtctcgacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
291 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127 |
cttcgcttaagatggattttctgctcctattcaatgtctggacagctgctggactgttttgaggtttgattttaagtttgatttcattttcatgttgcaa |
226 |
T |
|
| Q |
292 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcagtattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
227 |
aactgtaatgactaaaaagaatcatccactttgaaattttcagttactttagattcaatattcttcatacaattgtcttgatcaatcgtaatgtatttaa |
326 |
T |
|
| Q |
392 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327 |
atttgtgatatagagaactattcatatatattttatgactttgagtataat |
377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 1 - 64
Alignment:
| Q |
122 |
aggtctgaggacgggaagccatgatgtcctctgaatcatcttcctctccataaatataaatggg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1 |
aggtctgaggacgggaagccatgatgtcctctgaatcgtcttcctctccataaatataaatggg |
64 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 21156902 - 21156854
Alignment:
| Q |
57 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagat |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
21156902 |
ggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagat |
21156854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 39481168 - 39481211
Alignment:
| Q |
57 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39481168 |
ggtgacggtgagatgagatggtgatagatgacgttaatagtgtt |
39481211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 4117597 - 4117549
Alignment:
| Q |
57 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagat |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
4117597 |
ggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagat |
4117549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 47933936 - 47933984
Alignment:
| Q |
57 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagat |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
47933936 |
ggtgacggtgagatgagatggtaatagacgacgttaatggtgttcagat |
47933984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 30849830 - 30849786
Alignment:
| Q |
57 |
ggtgacggtgagatgagatggtgatagatgacgttaatggtgttc |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
30849830 |
ggtgacggtgagatgagatggtaatagatgatgttaatggtgttc |
30849786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University