View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_11 (Length: 447)
Name: NF20107_low_11
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 279 - 434
Target Start/End: Complemental strand, 54728899 - 54728745
Alignment:
| Q |
279 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
374 |
Q |
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| T |
54728899 |
aagaaagagctctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
54728800 |
T |
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| Q |
375 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatga |
434 |
Q |
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| T |
54728799 |
accactc----atagttt-atgttgtattgatctatatttgtcgaggatgactctgatga |
54728745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 54729405 - 54729359
Alignment:
| Q |
22 |
ggctgttgcttgattggtaatcttgtataagctccaacattccttga |
68 |
Q |
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| T |
54729405 |
ggctgttgcttgattggtaatcttgtataagctctaacattccttga |
54729359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 279 - 434
Target Start/End: Complemental strand, 5303292 - 5303138
Alignment:
| Q |
279 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
374 |
Q |
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| T |
5303292 |
aagaaagagatctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagcgaacagatttataccaatgctacaaacacctaaattttat |
5303193 |
T |
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| Q |
375 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatga |
434 |
Q |
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| T |
5303192 |
accactc----atagttt-atgttgtattgatcgatatttgtcgaggatgactctgatga |
5303138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 5303796 - 5303750
Alignment:
| Q |
22 |
ggctgttgcttgattggtaatcttgtataagctccaacattccttga |
68 |
Q |
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| T |
5303796 |
ggctgtttcttgattggtaatcttgtataagctctaacattccttga |
5303750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 26588599 - 26588524
Alignment:
| Q |
291 |
tgatggctgaaggtctgatcaggttggtgtctgcccatgcaagccaacagatttataccagagctacaaacaccta |
366 |
Q |
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| T |
26588599 |
tgatggctaaaggtttaatcaggttggtgtctgctcattcaagtcagcagatttacaccagggctacaaacaccta |
26588524 |
T |
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