View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_12 (Length: 444)
Name: NF20107_low_12
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 88 - 348
Target Start/End: Original strand, 8525319 - 8525570
Alignment:
| Q |
88 |
ccacaccattatgaataaatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaa |
187 |
Q |
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| T |
8525319 |
ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa-----------aactaagtgtggatgatattttaaggaa |
8525407 |
T |
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| Q |
188 |
cgcaacatctatatttatatccaaattggaaatacaatattttcagaaacaatatttagtgattgtttttccttggtggaccaacacatagcaacataaa |
287 |
Q |
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| T |
8525408 |
cacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgtttttccttggtggaccaacacatcgcaacataaa |
8525507 |
T |
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| Q |
288 |
taattgttaatatttctattggaatctatggctggagaatgtcgatccaca--tgaaatatat |
348 |
Q |
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| T |
8525508 |
taattgttaatatttctattggaatctatggctcgagaatgtcgatgcacaattgaaatatat |
8525570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 8528833 - 8528886
Alignment:
| Q |
294 |
ttaatatttctattggaatcta-tggctggagaatgtcgatccacatgaaatat |
346 |
Q |
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| T |
8528833 |
ttaatatttctattgggatctaatggctggagaatgtctatcaacataaaatat |
8528886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 25520752 - 25520646
Alignment:
| Q |
109 |
attttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatc |
208 |
Q |
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| T |
25520752 |
attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagc |
25520653 |
T |
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| Q |
209 |
caaattg |
215 |
Q |
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| T |
25520652 |
caaattg |
25520646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 12251659 - 12251723
Alignment:
| Q |
287 |
ataattgttaatatttctattggaatctatggctggagaatgtcgatccacatgaaatatatgtg |
351 |
Q |
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| T |
12251659 |
ataattgttactatttctatttgaatctatggatggagaatgtctatccacataaaatatatgtg |
12251723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 12250641 - 12250710
Alignment:
| Q |
105 |
aatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaat |
178 |
Q |
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| T |
12250641 |
aatgattttgtggaaagtgt----aaatggtttaactgaaagaaaaccaatagaaaagcaagtgtggatgaaat |
12250710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 42125916 - 42125982
Alignment:
| Q |
157 |
gaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatccaaattggaaataca |
223 |
Q |
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| T |
42125916 |
gaaaagtaagtgtggatgaaatggtaagaaacacaacctaaatatttatagccaaattgaaaataca |
42125982 |
T |
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