View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_14 (Length: 389)
Name: NF20107_low_14
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 11201492 - 11201116
Alignment:
| Q |
1 |
cactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcttgttaaggttgaagcctatgattgaagtctcttgaa |
100 |
Q |
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| T |
11201492 |
cactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaa |
11201393 |
T |
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| Q |
101 |
agattatggagtttcggttgtgtttctgatgtccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatct |
200 |
Q |
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| T |
11201392 |
agattatggagtttcggttgtgttgctgatgtccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatct |
11201293 |
T |
|
| Q |
201 |
gctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtagaagacttaaggattat |
300 |
Q |
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| T |
11201292 |
gctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtagaagacttaaggattat |
11201193 |
T |
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| Q |
301 |
ctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctg |
377 |
Q |
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| T |
11201192 |
ctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctg |
11201116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 11162717 - 11162433
Alignment:
| Q |
1 |
cactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcttgttaaggttgaagcctatgattgaagtctcttgaa |
100 |
Q |
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| T |
11162717 |
cactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaa |
11162618 |
T |
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| Q |
101 |
agattatggagtttcggttgtgtttctgatgtccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatct |
200 |
Q |
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| T |
11162617 |
agattatggagtttcggttgtgttgctgatgtccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatct |
11162518 |
T |
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| Q |
201 |
gctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
285 |
Q |
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| T |
11162517 |
gctatacttttgatttatttctactgcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
11162433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 11162436 - 11162387
Alignment:
| Q |
328 |
tagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctg |
377 |
Q |
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| T |
11162436 |
tagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctg |
11162387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 248995 - 249083
Alignment:
| Q |
289 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctg |
377 |
Q |
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| T |
248995 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgaggtagtaaacctcaaatatgttttgtccattgcatgtctg |
249083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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