View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_15 (Length: 388)
Name: NF20107_low_15
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 53805766 - 53805394
Alignment:
| Q |
1 |
ctcaaaatcatcttttagttctgattcagatgctgaacacgtcccactgcattctgaatcagaaccagaaccggaggatacagaagaaaattctcaatta |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805766 |
ctcaaaatcatcttctagttctgattcagatgctgaacacgtcccgctgcattctgaatcagaaccagaaccggaggatacagaagaaaattctcaatta |
53805667 |
T |
|
| Q |
101 |
tgcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcctgataatgtgactttcatgacctacgtcaaacctatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805666 |
tgcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcctgataatgtgactttcatgacctacgtcaaacctatct |
53805567 |
T |
|
| Q |
201 |
acgattcctattctcctccgcctccgttgaataccaccgaaaacttttccggtttaaatccgccgtcaccgcctcctccgagcaactctgcttgggaatt |
300 |
Q |
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| T |
53805566 |
acgattcctattctcctccgcctccgtcgaataccaccggaaacttttccggtttaaatccgccgtcaccgcctcctccgagcaactctgcttgggaatt |
53805467 |
T |
|
| Q |
301 |
tttggacttctttgaaccgtacgagaaattcaaagtacgttacagtcacggtggggacggttacactgacacc |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805466 |
tttggacttctttgaaccgtacgagaaattcaaagtacgttacagtcacggtggggacggttacactgacacc |
53805394 |
T |
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