View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_16 (Length: 387)
Name: NF20107_low_16
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 7207061 - 7206886
Alignment:
| Q |
16 |
aaactgaaattgcatgtagtttcaaaaaacataaa-gatctagaaagcaaagatctttattagatcagaaggtagtgtggaaatatttacgtatttaatg |
114 |
Q |
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| T |
7207061 |
aaactgaaattgcatgtagtttcaaaaaacataaaagatctagaaagcaaagatctttattcgatcagaaggtagtgtggaaatatttatgtatttaatg |
7206962 |
T |
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| Q |
115 |
ggaatggagatgacattactcagtttagcaattaaaatatgttaaaaagctgaaagccgcgttaatagcggaaact |
190 |
Q |
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| T |
7206961 |
ggaatggagatgacattattcagtttagcaattaaaatatgttaaaaagctgaaagccgcgttaatagcgcaaact |
7206886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 7200501 - 7200349
Alignment:
| Q |
17 |
aactgaaattgcatgtagtttcaaaaaacataaagatctagaaagcaaagatctttattagatcagaaggtagtgtggaaatatttacgtatttaatggg |
116 |
Q |
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| T |
7200501 |
aactgaaattgcatatagtttcgaaaaacataaagatctagaaagcaaagatctttattggat-agaaggtagtgtggaaatatttatatatttaatggg |
7200403 |
T |
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| Q |
117 |
aatggagatgacattactcagtttagcaattaaaatatgttaaaaagctgaaag |
170 |
Q |
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| T |
7200402 |
aatggagatgaccttattcagtttagcaattaaaatatgttagaaagatgaaag |
7200349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 169 - 306
Target Start/End: Complemental strand, 7200324 - 7200190
Alignment:
| Q |
169 |
agccgcgttaatagcggaaactttgggttgcctacattaattatagactgcagcaccttcattctgttgggtgtgagggat-gtgtttagtcccacgtcg |
267 |
Q |
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| T |
7200324 |
agccgctttaatagcggaaactttgggttgcctatgttg----tagtctgcagcaccttcattctgttgggaatgacggtttgtgtttagtcccacgttg |
7200229 |
T |
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| Q |
268 |
tctaaagatatgacatatgtagttctcatatcctaacca |
306 |
Q |
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| T |
7200228 |
tctaaagatatgacatatgtagttctcatatcctaacca |
7200190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 7206881 - 7206832
Alignment:
| Q |
328 |
ttgatgctctgagatcaaagctcagtgtgtatgatctatcatcttttcat |
377 |
Q |
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| T |
7206881 |
ttgaagctctgagatcaaagctcagtgtgtatgatctatcatcttttcat |
7206832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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