View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_17 (Length: 385)
Name: NF20107_low_17
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 11960456 - 11960806
Alignment:
| Q |
13 |
aatataactatagcaaatgacagcaaatataaagcactcgatggtaatctttattcaactaattgatttattttgttttgacaatttgatttatgtatct |
112 |
Q |
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||||||||||||||| ||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
11960456 |
aatataactatagcacatgacggcaaatataagtcactcaatggcaatctttattcaactaattgatttattttgtcctgacaaattgatttataaatct |
11960555 |
T |
|
| Q |
113 |
accaatttaaaaatacnnnnnnnnnnnnnnnaatctcatgttgctatgctttgatttaaggaaatatgatggatttttcttcgatttcttgtaaggaacc |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11960556 |
accaatttaaaaatactatctttttt------atctcatgttgctatgctttgatttgaggaaatatgatggatttttcttcgatttcttgtaaggaacc |
11960649 |
T |
|
| Q |
213 |
tgagaatgagtgtcaattttagaggtgccatggaaggaagcataaaagtttggtaacggtggtgactaacagagtaagcatgaggggaggtaaatgnnnn |
312 |
Q |
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|||||||||||||||| |||||||||||||||||||||| | | |||||||||||||| |||||||||||||||||| |||| ||||||||||||| |
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| T |
11960650 |
tgagaatgagtgtcaaatttagaggtgccatggaaggaaccttgaaagtttggtaacgatggtgactaacagagtaaacatgcggggaggtaaatgtttt |
11960749 |
T |
|
| Q |
313 |
nnncaaactagagagggtgtaagtgtcattaagtaaaacctcaagggagttaaatgt |
369 |
Q |
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| T |
11960750 |
tttaaaactagagggggtgtgagtgtcattaagtaaaacctcaagggaggtaaatgt |
11960806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 145 - 354
Target Start/End: Complemental strand, 39984687 - 39984476
Alignment:
| Q |
145 |
atctcatgttgctatgctttgatttaaggaaatatgatggatttttcttcgatttcttgtaaggaacctgagaatgagtgtcaattttagaggtgccatg |
244 |
Q |
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| T |
39984687 |
atctcatgttgccatgctttgatttgaggaaatatgatggatttttcttcgatttcttgtaaggaacctgagaatgagtgtcaattttagaggtgccatg |
39984588 |
T |
|
| Q |
245 |
gaaggaagcataaaagtttggtaacggtggtgactaacagagtaagcatgaggggaggtaaatg--nnnnnnncaaactagagagggtgtaagtgtcatt |
342 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
39984587 |
gaaggaagcatagaagtttggtaacggtggtgactaacagagtaagcatgaggggaggtaaatgtttttttttcaaattagagggggtgtaagtgtcatt |
39984488 |
T |
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| Q |
343 |
aagtaaaacctc |
354 |
Q |
| |
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|||||||||||| |
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| T |
39984487 |
aagtaaaacctc |
39984476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 39984773 - 39984715
Alignment:
| Q |
70 |
actaattgatttattttgttttgacaatttgatttatgtatctaccaatttaaaaatac |
128 |
Q |
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| T |
39984773 |
actaattgatttattttgttttgacaatttgatttatgtatctaccaatttaaaaatac |
39984715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 39985124 - 39985065
Alignment:
| Q |
13 |
aatataactatagcaaatgacagcaaatataaagcactcgatggtaatctttattcaact |
72 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39985124 |
aatataactatagcaaatgacagcaaatataaatcactcgatggtaatctttattcaact |
39985065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 45843328 - 45843216
Alignment:
| Q |
16 |
ataactatagcaaatgacagcaaatataaagcactcgatggtaatctttattcaactaattgatttattttgttttgacaatttgatttatgtatctacc |
115 |
Q |
| |
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||||||| ||| ||||||||||||||||| |||| || | ||||||||||||||||||||||||| |||| | || ||| ||||||| || ||||| | |
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| T |
45843328 |
ataactaaggcacatgacagcaaatataaatcacttgacagcaatctttattcaactaattgatttactttggtctgccaagttgatttctgaatctatc |
45843229 |
T |
|
| Q |
116 |
aatttaaaaatac |
128 |
Q |
| |
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||||||||||||| |
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| T |
45843228 |
aatttaaaaatac |
45843216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 45843202 - 45843098
Alignment:
| Q |
147 |
ctcatgttgctatgctttgatttaaggaaatatgatggatttttcttcgatttcttgtaaggaacctgagaatgagtgtcaattttagaggt-gccatgg |
245 |
Q |
| |
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|||||||||| ||||| |||||| ||||| || |||| ||||| |||| ||| ||||||||||| |||||||| || |||||||| |||| ||||||| |
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| T |
45843202 |
ctcatgttgcaatgctctgatttgaggaactacgatgaattttgcttcaattacttgtaaggaagttgagaatgggttacaattttaaaggtggccatgg |
45843103 |
T |
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| Q |
246 |
aagga |
250 |
Q |
| |
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||||| |
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| T |
45843102 |
aagga |
45843098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 19986579 - 19986512
Alignment:
| Q |
58 |
aatctttattcaactaattgatttattttgttttgacaatttgatttatgtatctaccaatttaaaaa |
125 |
Q |
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|||||||||| |||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
19986579 |
aatctttatttaactaactgatttattttgttatgacaaattgatttatgaatctaccaatttaaaaa |
19986512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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