View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20107_low_18 (Length: 384)
Name: NF20107_low_18
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 41301705 - 41302066
Alignment:
| Q |
9 |
cgaagaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataannnnnnnng-atttattcaaacacaattgtatatgtag |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41301705 |
cgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataattatttatttatttattcaaacacaattgtatatgtag |
41301804 |
T |
|
| Q |
108 |
ttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggttttgtct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41301805 |
ttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggttttgtct |
41301904 |
T |
|
| Q |
208 |
aatatgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataaggcgcatcacatcatatctaattattttaatgatcc |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41301905 |
aatatgcataagtaagaagatcttacatcatatacaaatatcttttttaccattgaattaataaggcgcatcacatcatatctaattattttaatgatcc |
41302004 |
T |
|
| Q |
308 |
aatgataaatagtttgtgcataatgtaagaccatc-tatctcatttatgcatcatataattg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
41302005 |
aatgataaatagtttgtgcataatgtaagaccttcgtatctcatttatgcatcatataattg |
41302066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 26853080 - 26853152
Alignment:
| Q |
200 |
ttttgtctaatatgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataag |
272 |
Q |
| |
|
|||||| ||| ||||| |||||| | | ||||||||||| | |||||||||||||||| ||| ||||||||| |
|
|
| T |
26853080 |
ttttgtttaacatgcacaagtaaaatggtcttgcatcatgaaaaaatgtctttttcaccgttggattaataag |
26853152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University