View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_19 (Length: 381)
Name: NF20107_low_19
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 11102983 - 11103354
Alignment:
| Q |
1 |
tttaaaaatacatataatttaattcctttta----tttatttatttatgtatgtgcccaaatcacttttacttggggttacaaccacacaaacaaattgg |
96 |
Q |
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| T |
11102983 |
tttaaaaatacatataatttaattccttttatttatttatttatttatgtatgtgcccaaatcatttttacttggggttacaaccacacaaacaaattgg |
11103082 |
T |
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| Q |
97 |
agaacataaagaattacacggttaatttgagacttacatagaaacacatcatgatttattcaacatcttaaataatattaatataatttgtaaatgatct |
196 |
Q |
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| T |
11103083 |
agaacataaagaattacacggttaatttgagacttacatagaaacacatcatgatttattcaacatcttaaataatattaatataatttgtaaatgatct |
11103182 |
T |
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| Q |
197 |
cctttcatgaatatagcatagtgaatactactaatcatctcaatttgt---gactataaataaaagactcttgatgagttctaaacaaatttaagagaac |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
11103183 |
cctttcatgaatatagcatagtgaatactactaatcatctcaatttgtgacgactataaat-aaagtctcttgatgagttctaaacaaatttaagagaac |
11103281 |
T |
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| Q |
294 |
acaaaaatgggttccatgcgtattgtactaggggttgcactttggtgtgcagtcttgatgcatacaggatatg |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11103282 |
acaaaaatgggttccatgcgtattgtactaggggttgcactttggtgtgcagtcttgatgcatacaggatatg |
11103354 |
T |
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