View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_2 (Length: 752)
Name: NF20107_low_2
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 11160222 - 11159790
Alignment:
| Q |
13 |
aatatctataaatgagttaactcatatatttaaagcttcaaagttatgagttaaaatgtggtatcaaagtaccatttgtatggttgttcaaataaaataa |
112 |
Q |
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| T |
11160222 |
aatatctataaatgagttaactcatatatttaaagctttaaagttatgagttaaaatgtggtatcaaagtaccatttgtatggttgttcaaa----ataa |
11160127 |
T |
|
| Q |
113 |
aatgtgatgatccaaactttctcatgatcccaacaaaatattacattactttctcaaattcatattagtaaaaatgtaatatttcatttatttggtatta |
212 |
Q |
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| T |
11160126 |
aatgtgatgatccaaactttctcatga-cccaacaaaatattacattactttctcaaattcatattagtaaaaatgtaatatttcatttatttcgtatta |
11160028 |
T |
|
| Q |
213 |
agtctaaatatattggaactggaagtaacatttgtgtagctgaagtatgatagcaaatgtgtacgtaaaaaagaagaagaagcattttgtttggaagaaa |
312 |
Q |
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| T |
11160027 |
agtctaaatatattggaactggaagtaacatttgtgtagctgaagtgtgatagcaaatgtgtacgtaaaaaagaagaagaagcattttgtttggaagaaa |
11159928 |
T |
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| Q |
313 |
gaacagtacatgcacaatgtcttctggaatttgggaccataaactgaacggataaaattcggtcaggtcagtggccactcactggcaattaggtgattgg |
412 |
Q |
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| T |
11159927 |
gaacagtacatgcacaatgtcttctggaatttgggaccagaaactgaacggataaaattcggtcaggtcagtggccactcactggctattaggtgattgg |
11159828 |
T |
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| Q |
413 |
ctgttttggttaggttatatgacaatccattttcatca |
450 |
Q |
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| T |
11159827 |
ctgttttggttaggtcgtatgacaatccattttcatca |
11159790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 448 - 737
Target Start/End: Complemental strand, 11159677 - 11159375
Alignment:
| Q |
448 |
tcaaataattgacatcattcccctaaaaaagattgacaacattattattattactttattaatactaatatataagagtggattgcgtgt----ggttag |
543 |
Q |
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| T |
11159677 |
tcaaataattgacatcattcccctaaaaaagatcgacaacattattattactactttattaatactaatatataagagtggattgcgtgtggttggttag |
11159578 |
T |
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| Q |
544 |
gaagctcaaagaaattatgatattcatttggtggtggatggctgtgaagatatatgttcaggtta-aattgcagcca--------tgcacattgccacga |
634 |
Q |
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| T |
11159577 |
gaagctcaaagaaattatgatattcatttggtggtggatggctgtgaagatatattttcaggttacaattgcagccatgcacaattgcacattgccacga |
11159478 |
T |
|
| Q |
635 |
ctctccaacgtgtgctcttaggtgtaactcaatggggatgacacatatcgtaaggattaaataaaagaggctacaagatacgagtatatgtgacccaaca |
734 |
Q |
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| T |
11159477 |
ctctccaacgtgtgctcttaggtgtaactcaatggggatgacacatatcgtaaggattaaataaaagaggctacaagatacgagtatatgaaacccaaca |
11159378 |
T |
|
| Q |
735 |
taa |
737 |
Q |
| |
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||| |
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| T |
11159377 |
taa |
11159375 |
T |
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