View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_22 (Length: 374)
Name: NF20107_low_22
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 43231051 - 43230686
Alignment:
| Q |
1 |
ccatcacacaccaaaacaaactctaatcattatctccctcacggacctcttccaagagtttctttaattttaatttcaattatacacagacaaaagaaac |
100 |
Q |
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| T |
43231051 |
ccatcacacaccaaaacaaactctaatcattatctccctcacgcacctcttccaagagtttctttaattttaatttcaattatacgcagacaaaagaaac |
43230952 |
T |
|
| Q |
101 |
aacataacatactcatcatcgtagtctcagaaaatggaaattgaagcaaggcaaggcgtggtggcaaagaagctatggaacatggtacgtgtattattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43230951 |
aacataacatactcatcatcgtagtctcagaaaatggaaattgaagcaaggcaaggcgtggtggcaaagaagctatggaacatggtacgtgtattattgt |
43230852 |
T |
|
| Q |
201 |
tcattataagaaaaggcatagccaagagcaaaacaatggtagacctcaatttaattctcaaacgtgggaaacttgctggaaaagcattaatcaatactct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43230851 |
tcattataagaaaaggcatagccaagagcaaaacaatggtacacctcaatttgattctcaaacgtgggaaacttgctggaaaagcattaatcaatactct |
43230752 |
T |
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| Q |
301 |
catgctcaaccatcaattttatcattcttccttcacatgtcgctctgacaacaactcattcatctc |
366 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43230751 |
catgctcaaccatcaactttatcattcttccttcacatgtcgctccgacaacaactcattcatctc |
43230686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 43235240 - 43235173
Alignment:
| Q |
131 |
aaaatggaaattgaagcaaggcaaggcgtggtggcaaagaagctatggaacatggtacgtgtattatt |
198 |
Q |
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|||||| |||||| ||||||||||| | | || |||||||||||||||||||||||| |||||||||| |
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| T |
43235240 |
aaaatgaaaattggagcaaggcaagacatcgtagcaaagaagctatggaacatggtaagtgtattatt |
43235173 |
T |
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