View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_23 (Length: 374)
Name: NF20107_low_23
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 5397092 - 5396720
Alignment:
| Q |
1 |
tcaactataaaagagtacatcccatgtcctccaaggtacaatcttctaactccaaaaattcaaaactcttggctctcatacagatttgagcgtctgagtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5397092 |
tcaactataaaagagtacatcccatgtcctccaaggtacaatcttctaactccaaaaattcaaaactcttggctctcatacagatttgagcgtctgagtg |
5396993 |
T |
|
| Q |
101 |
cagttcttctgatcacctccgatcaaataacttaagagacagtgtgaaaattatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5396992 |
cagttcttctgatcacctccgatcaaataacttaagagacggtgtaaaaactatgtttgtcttaatatgaattatagtgcttgtgttttgtaattcacct |
5396893 |
T |
|
| Q |
201 |
gcttcaatggaaaccttccggtggtagtgtgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccacaac |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||| |
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| T |
5396892 |
gcttcaatggaaaccttccggtggtggtgtgagcaatggtgacagcgggattgaaatgagcaccagagatatgacctatagaatagactaataccataac |
5396793 |
T |
|
| Q |
301 |
agcaagtccccaaacaattgatattccaggaagtttgacaactttatccatgttaaggttcaccaccacagca |
373 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
5396792 |
agcaagtccccaaacaattgatattccaggaagtgtcacaactttatcattgttaaggttcaccaccacagca |
5396720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 103 - 371
Target Start/End: Original strand, 5407794 - 5408056
Alignment:
| Q |
103 |
gttcttctgatcacctccgatcaaataacttaagagacagtgtgaaaattatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacctgc |
202 |
Q |
| |
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|||||||| | |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5407794 |
gttcttctaaccacctccgctcaaataacttaagaga------gaaacttatgtttgtcttaatatgaattatagtgcttgtgttttgtaatttacctgc |
5407887 |
T |
|
| Q |
203 |
ttcaatggaaaccttccggtggtagtgtgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccacaacag |
302 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||||||| |||| |
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| T |
5407888 |
ttcaatggaaaccttccggttgtagtgtgagcaatggtgaccgcgggattgaaatgggcaccagagatatgacctatagaatagactaataccataacaa |
5407987 |
T |
|
| Q |
303 |
caagtccccaaacaattgatattccaggaagtttgacaactttatccatgttaaggttcaccaccacag |
371 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
5407988 |
caagtccccaaacaattgcaattccaggaagtgtcacaactttatcattgttaaggttcaccaccacag |
5408056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 5388754 - 5388611
Alignment:
| Q |
230 |
tgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccacaacagcaagtccccaaacaattgatattccag |
329 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || ||||||| ||| || ||||| |||| ||||| || |||||||||||||| || |||| |
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| T |
5388754 |
tgagcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccag |
5388655 |
T |
|
| Q |
330 |
gaagtttgacaactttatccatgttaaggttcaccaccacagca |
373 |
Q |
| |
|
|| || | || ||||| || ||| ||| |||||||| |||||| |
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| T |
5388654 |
gatgtgttactactttgtcattgtcaagattcaccacaacagca |
5388611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 5402563 - 5402420
Alignment:
| Q |
230 |
tgagcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccacaacagcaagtccccaaacaattgatattccag |
329 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || ||||||| ||| || ||||| |||| ||||| || |||||||||||||| || |||| |
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|
| T |
5402563 |
tgagcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccag |
5402464 |
T |
|
| Q |
330 |
gaagtttgacaactttatccatgttaaggttcaccaccacagca |
373 |
Q |
| |
|
|| || | || ||||| || ||| ||| |||||||| |||||| |
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|
| T |
5402463 |
gatgtgttactactttgtcattgtcaagattcaccacaacagca |
5402420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 5415296 - 5415194
Alignment:
| Q |
232 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccacaacagcaagtccccaaacaattgatattccagga |
331 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||| || ||||||| ||| || | ||| |||| ||||| | ||||||| ||| || ||||||||| |
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|
| T |
5415296 |
agcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccagga |
5415197 |
T |
|
| Q |
332 |
agt |
334 |
Q |
| |
|
||| |
|
|
| T |
5415196 |
agt |
5415194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 36267747 - 36267645
Alignment:
| Q |
232 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccacaacagcaagtccccaaacaattgatattccagga |
331 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| || ||||||| ||| || |||| |||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
36267747 |
agcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaagagagtaaaccagcaccatcacagcaagtccccaaacaattgaaattccagga |
36267648 |
T |
|
| Q |
332 |
agt |
334 |
Q |
| |
|
||| |
|
|
| T |
36267647 |
agt |
36267645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 36262586 - 36262498
Alignment:
| Q |
232 |
agcaatggtgacagcgggattgaaatgagcaccagatatatgaccaatagaatagaccaataccacaacagcaagtccccaaacaattg |
320 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |||||||||| ||| || | |||||||| | || |||||||||||||||| |
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|
| T |
36262586 |
agcaatagtaacagcaggattgaaatgagcaccagagatatgaccaagagagtaaatcaataccaacaaagttagtccccaaacaattg |
36262498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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