View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_24 (Length: 367)
Name: NF20107_low_24
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 11908946 - 11909281
Alignment:
| Q |
23 |
ggggtcgtagggtgttatatagcttgtactagagcaggtcggtccatatacagcctaggttttatatttttatcatgtcatattaggctacatgtgtgtg |
122 |
Q |
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| T |
11908946 |
ggggtcttagggtgttacatagcttgtactagagcaggtcggtccatatacagcctaggttttatatttttatcatgtcatattaggctacatgtgtgtg |
11909045 |
T |
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| Q |
123 |
aacactacaaatgcctaactccttagtaattttctgatttacggtgatgcatataagaaacggtaggaggtagaaatgatcaggcaattgctgaagcctt |
222 |
Q |
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| T |
11909046 |
aacactacaaatgcctaactccttagtaattttctgatttatggtgatgcatataagaaacggtaggaggcagaaatgatcaggcaattgctgaagcctt |
11909145 |
T |
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| Q |
223 |
ggcagcgatggcatccaaatcagcagggaagtaacgatgagttccgagcactgggaagatttcaaggggaggtacgatcctcgaggtgctcagatttgga |
322 |
Q |
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| T |
11909146 |
gccagcgatggcatccaaatcagcagggaagtaacgacgagttccgagcaccgtgaagatttcaaggggaggtacgatcctcgaggtgctcagatttgga |
11909245 |
T |
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| Q |
323 |
tccaagcgattgagaagatttacataatgatgatgt |
358 |
Q |
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| T |
11909246 |
tccaagcgattgagaagatttacataatgatgatgt |
11909281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 11918597 - 11918552
Alignment:
| Q |
313 |
cagatttggatccaagcgattgagaagatttacataatgatgatgt |
358 |
Q |
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| T |
11918597 |
cagatttggatccaagcgattgagaagatttacataatgatgatgt |
11918552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 11777347 - 11777447
Alignment:
| Q |
131 |
aaatgcctaactccttagtaattttctgatttacggtgatgcatataagaaacggtaggaggtagaaatgatcaggcaattgctgaagccttggcagcga |
230 |
Q |
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||||||||||||| | | ||||| ||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||| | |||||||| | ||||| |
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| T |
11777347 |
aaatgcctaactcttaaataattgtctgattct-ggtgatgcagataagaaaaggttagaggtagaaatgatcaggcaattaccgaagcctttgtagcga |
11777445 |
T |
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| Q |
231 |
tg |
232 |
Q |
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|| |
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| T |
11777446 |
tg |
11777447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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