View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_25 (Length: 366)
Name: NF20107_low_25
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 177 - 349
Target Start/End: Complemental strand, 11615630 - 11615455
Alignment:
| Q |
177 |
atcaataactgcatttgtaactgacttttagataagtttgttttaaattctat---tagttagattgcttgctccaaaagcaagtggcttgtgtgcctat |
273 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
11615630 |
atcaataactgcatttgtaactaacttctagataagtttgttttaaattctatagttagttagattgcttgctacacaagcaagtgacttgtgtgcctat |
11615531 |
T |
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| Q |
274 |
ataaaggctttgtattgtgaaactcaatatatgaatcacattcacatcattaccaattatcattcattctagttct |
349 |
Q |
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| T |
11615530 |
ataaaggctttgtattgtgaaactcaaaatatgaatcacattcacatcattaccaatcatcattcattctatttct |
11615455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 44812473 - 44812414
Alignment:
| Q |
177 |
atcaataactgcatt-tgtaactgacttttagataagtttgttttaaattctattagttag |
236 |
Q |
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| T |
44812473 |
atcaaaaactgcattctgtaact-atttttagataagtttgttttaaactctatgagttag |
44812414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 177 - 299
Target Start/End: Complemental strand, 6681859 - 6681734
Alignment:
| Q |
177 |
atcaataactgca-tttgtaactgacttttagataagtttgttttaaattcta--ttagttagattgcttgctccaaaagcaagtggcttgtgtgcctat |
273 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||| |||||| ||| ||||||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
6681859 |
atcaataactgcactttgtaactgatttttagataagtttgctttaaactctgagttagttatattacttgctccacaagcaagtggcttgtgtgcctat |
6681760 |
T |
|
| Q |
274 |
ataaaggctttgtattgtgaaactca |
299 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6681759 |
ataaaggctttgtattgtgaaactca |
6681734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 289
Target Start/End: Complemental strand, 11860076 - 11859960
Alignment:
| Q |
177 |
atcaataactgcatttgtaactgacttttagataagtttgttttaaattcta----ttagttagattgcttgctccaaaagcaagtggcttgtgtgccta |
272 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
11860076 |
atcaataactgcatttgtaactaacttttagataggtttgtttcaaattctatgagttagttagattacttgttccacaagcaagtggcttgtgtgccta |
11859977 |
T |
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| Q |
273 |
tataaaggctttgtatt |
289 |
Q |
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|||||||| || ||||| |
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| T |
11859976 |
tataaaggtttcgtatt |
11859960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 299
Target Start/End: Complemental strand, 24520901 - 24520776
Alignment:
| Q |
177 |
atcaataactgcatttgtaactgacttttagataagtttgtttt-aaattcta----ttagttagattgcttgctccaaaagcaagtggcttgtgtgcct |
271 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||| || | |||||||| | | ||||||| |
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| T |
24520901 |
atcaataaatgcatttgtaactaacttttagataagtttgttttaaaattctattagttagttagacagcttgttctacaagcaagt-gatattgtgcct |
24520803 |
T |
|
| Q |
272 |
atataaaggctttgtattgtgaaactca |
299 |
Q |
| |
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||| |||||||||||||||||||||||| |
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|
| T |
24520802 |
ata-aaaggctttgtattgtgaaactca |
24520776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 11186948 - 11186845
Alignment:
| Q |
204 |
ttagataagtttgttttaaattcta----ttagttagattgcttgctccaaaagcaagtg--gcttgtgtgcctatataaaggctttgtattgtgaaact |
297 |
Q |
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|||| ||||||||||| ||| |||| ||||| ||||| ||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
11186948 |
ttagttaagtttgtttcaaaatctaatagttagtgagattacttgctctacaagcaagtgactcttttgtgcctatat-aaggctttgtattgtgaaact |
11186850 |
T |
|
| Q |
298 |
caata |
302 |
Q |
| |
|
|||| |
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|
| T |
11186849 |
taata |
11186845 |
T |
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