View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20107_low_26 (Length: 358)
Name: NF20107_low_26
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 160 - 343
Target Start/End: Complemental strand, 27774931 - 27774748
Alignment:
| Q |
160 |
ttgttgttttttactacaaattataacatttgcatctactctaagatatttttccttacattgatttttatattgcagatgctgagggatgactcccttc |
259 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27774931 |
ttgttgttttttactacaaatgataacatttgcatctactctaagatatttttccttacattgatttttatattgcagatgctgagggatgactcccttc |
27774832 |
T |
|
| Q |
260 |
ccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctactcctgcaaccgatgatg |
343 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27774831 |
ctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctactcctgcaaccaatgatg |
27774748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 12551289 - 12551139
Alignment:
| Q |
19 |
ggtgtgacgcagaatttaattatgaaacaggaaaactaaattgatttctaactctgaaataatgttggttgttcaattagtttagtgttagattttaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12551289 |
ggtgtgacgcagaatttaattatgaaacaggaaaactaaattgatttctaactctgaaataatgttggttgttcaattagtttagtgttagattttaaat |
12551190 |
T |
|
| Q |
119 |
aaaagtttgtgacaacgatctaaattataacatcaagacctttgttgtttt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12551189 |
aaaagtttgtgacaacgatctaaattataacatcaagatctttgttgtttt |
12551139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University