View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_27 (Length: 344)
Name: NF20107_low_27
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 4535023 - 4534693
Alignment:
| Q |
13 |
aatattacatacataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttactgattcaaatgtcactacaaaagaaatgaat |
112 |
Q |
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| T |
4535023 |
aatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttgatgattcaaatgtcactacaaaagaaatgaat |
4534924 |
T |
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| Q |
113 |
gggagctatcaataaatataaatttagatttttgataaataaaattgagcaatgaataagttgaggatctgaggatggaaaggtcgagatcttgtctgtc |
212 |
Q |
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| T |
4534923 |
ggaa-ctatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatctaaggatggaaaggtcgagatcttgtctgtc |
4534825 |
T |
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| Q |
213 |
atcaacgtcattctgcaggagtttccagcgagatcaatacggtgattaaaaacaacctacagaaaagcaaattataaatatttatactacatagagtaca |
312 |
Q |
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| T |
4534824 |
atcaacgtcattctgcaggagtttcctgcgagatcaatacggtgattaaaagcaacctacagaaaagccaattataaatatttatactacatagagtaca |
4534725 |
T |
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| Q |
313 |
taagtataatatcaaggcatataaactatctt |
344 |
Q |
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| T |
4534724 |
taagtataatatcaaggcatataaactatctt |
4534693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 24061896 - 24062043
Alignment:
| Q |
13 |
aatattacatacataaaagagaaactaatcaaaaaa-gttcttctcaacaatagattaaaaatctctt-actgattcaaatgtcactacaaaagaaatga |
110 |
Q |
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||||||||||| ||||| || |||||||| |||||| ||| || ||||||||||||| || ||||||| | | | |||||| ||||| ||||||||||| |
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| T |
24061896 |
aatattacataaataaacgataaactaataaaaaaaagtttttttcaacaatagattcaacatctcttgatggctccaaatgccactaaaaaagaaatga |
24061995 |
T |
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| Q |
111 |
atgggagctatcaataaatataaatttagatttttgataaataaaatt |
158 |
Q |
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| T |
24061996 |
atggaaaatattaatgaatataaatttatatttctagtaaataaaatt |
24062043 |
T |
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