View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20107_low_28 (Length: 332)

Name: NF20107_low_28
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20107_low_28
NF20107_low_28
[»] chr2 (3 HSPs)
chr2 (12-160)||(30736139-30736287)
chr2 (162-211)||(3555332-3555381)
chr2 (162-211)||(41587316-41587365)
[»] chr8 (4 HSPs)
chr8 (161-281)||(34060570-34060690)
chr8 (162-211)||(7294183-7294232)
chr8 (162-211)||(34061625-34061674)
chr8 (162-211)||(34176523-34176572)
[»] chr1 (1 HSPs)
chr1 (162-211)||(17691301-17691350)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 30736287 - 30736139
Alignment:
Q  12 taattcttgacaaatgcccattattcttaatgtttaatggagatgagaaccactgggatatgtttaatagagtttcaagtaatggaagaagagagagttc 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30736287 taattcttgacaaatacccattattcttaatgtttaatggagatgaaaatcactgggatatgtttaatagagtttcaagtaatggaagaagagagagttc 30736188  T
Q  112 atgctcgttactattccaattcattcgtggggttcgcacgataaactca 160  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30736187 atgctcgttgctattccaattcattcgtggggttcgcacgataaactca 30736139  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 3555332 - 3555381
Alignment:
Q  162 ttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcact 211  Q
    ||||||||||||||||||||||| ||| ||| | |||| |||||||||||    
T  3555332 ttgcattctttaatcatttaaaatttcgtcctttaacccagttaatcact 3555381  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 41587316 - 41587365
Alignment:
Q  162 ttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcact 211  Q
    ||||||| ||||||||||||||| ||||||| | |||||| |||||||||    
T  41587316 ttgcattgtttaatcatttaaaatttcatcctttaaccaacttaatcact 41587365  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 34060570 - 34060690
Alignment:
Q  161 gttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcactaattggaagtgtttttgctgacgtggtagaacgactatgcaaaatggcc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| | ||||||||| ||||||||||    
T  34060570 gttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcactaattatgagtgtttttgctgacgtggcaaaacgactatccaaaatggcc 34060669  T
Q  261 atgaaaagactattttacccc 281  Q
    |||||||||||||||||||||    
T  34060670 atgaaaagactattttacccc 34060690  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 7294183 - 7294232
Alignment:
Q  162 ttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcact 211  Q
    ||||||||||||||||||||||| ||||||| |  ||| |||||||||||    
T  7294183 ttgcattctttaatcatttaaaatttcatcctttgacccagttaatcact 7294232  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 34061674 - 34061625
Alignment:
Q  162 ttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcact 211  Q
    ||||||||||||||||||||||| ||| ||| |  |||||||||||||||    
T  34061674 ttgcattctttaatcatttaaaatttcgtcctttgaccaagttaatcact 34061625  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 34176523 - 34176572
Alignment:
Q  162 ttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcact 211  Q
    ||||||||||||||||||||||| ||||||| |  ||| |||||||||||    
T  34176523 ttgcattctttaatcatttaaaatttcatcctttgacccagttaatcact 34176572  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 17691301 - 17691350
Alignment:
Q  162 ttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcact 211  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||| ||||    
T  17691301 ttgcattgtttaatcatttaaaatttcgtccctcaaccaagttaaccact 17691350  T

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