View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_34 (Length: 290)
Name: NF20107_low_34
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_34 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 45056280 - 45056002
Alignment:
| Q |
12 |
acagaaaagacagttattaaagagcaatcaaatgagcctaaaatcgtggaggaggaatccaacgatgaggttagtatggaatcagagaagaaaagaacga |
111 |
Q |
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| T |
45056280 |
acagaaaaggcagttattaaagagcaatcaaatgagcctaaaatcgtggaggaggaatccaacgatgaggttagtatggaatcagagaagaaaagaatga |
45056181 |
T |
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| Q |
112 |
gggatgtgcgtaataatgtccacaaatatctacataatccaatggtcaattcatttaattagtacaatttcgaccaataatgtctgagatttgtaatcac |
211 |
Q |
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| T |
45056180 |
gggatgggcgtaataatgtccacaaatatctacataatccaatggtcaattcatttaattagtacaatttcgaccaataatgtctgagatttgtaatcac |
45056081 |
T |
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| Q |
212 |
atgcctgtccacacactaccaacaacatagaaaagtaattgcaccatccaacaacataaaagaaaccctagagagaaca |
290 |
Q |
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| T |
45056080 |
atgcctgtccacacactaccaacaacatagaaaagtaattgcaccatccaacaacataaaagaaaccctagagagaaca |
45056002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 45195294 - 45195409
Alignment:
| Q |
12 |
acagaaaagacagttattaaagagcaatcaaatgagcctaaaatcgtggaggaggaatccaacgatgaggttagtatggaatcagagaagaaaagaacga |
111 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45195294 |
acagaaaaggcagttattaaagagcaatcaaatgagcctaaaatcgtggaggaggaatccaacgatgaggttagtatggaatcagagaagaaaagaatga |
45195393 |
T |
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| Q |
112 |
gggatgtgcgtaataa |
127 |
Q |
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| T |
45195394 |
gggatgagtgtaataa |
45195409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 7554079 - 7554121
Alignment:
| Q |
246 |
gtaattgcaccatccaacaacataaaagaaaccctagagagaa |
288 |
Q |
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| T |
7554079 |
gtaattgcaccatccaacaacataaaagaaacactacagagaa |
7554121 |
T |
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